Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 376 / 3e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 378 / 4e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 365 / 5e-118 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 343 / 1e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G15980 345 / 9e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 326 / 7e-104 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 322 / 8e-102 ATPMEPCRA methylesterase PCR A (.1) AT5G04960 320 / 4e-101 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 311 / 3e-97 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 306 / 4e-96 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031469 [exp] 1133 / 0 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 607 / 0 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 350 / 2e-112 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 337 / 3e-107 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 334 / 5e-106 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 324 / 2e-104 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 325 / 4e-103 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 327 / 9e-103 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 321 / 1e-101 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013400 [exp] 474 / 2e-160 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 466 / 2e-157 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 390 / 6e-128 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 338 / 2e-107 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 335 / 3e-107 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 330 / 2e-104 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 320 / 2e-101 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 320 / 8e-101 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.002G145500 [exp] 316 / 6e-100 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 316 / 3e-99 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10015211 pacid=23149557 polypeptide=Lus10015211 locus=Lus10015211.g ID=Lus10015211.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGGAGGAAAGAAGCGGTTTGTGATCATCGGAGTCTCGTCGTTCCTCCTGGTGGCGATGGTCATAGCCGTCACCGTCGGCGTGCTCGGCG CCTCGTCGTCCCCCCTGGTGGGGATGGTCGTAGCCGTCCCCGTCGGCGTCGGCAACCAGGAAGAGGGCGCCAACGTCGGATCCGGCCACCCGGAGAACAT CGCCGCCTCTAGGAAGGCCATCACGGCCATCTGCCAGCCGGCGGACTTCCGGAAGGCGTGCGAGCAGAGCCTAGAAAAGTCGACGGGCGGGAACGTGACC GACCCGAAAGAGCTCGTCAAGGTCGCGTTCAAGCTCGCCCAGAAGAGCATCAAAGATTCGCTCGGGAAGTCCGACACGTGGAAAGAGCTCGACAGTGACG CCAAGACCCACGAGGCTCTGGTCACTTGTAAAGAGCTCATTAACATGTCAGTGACCGAACTCGAGGATTGTCTAGTAAAAGTATCGGAGGACTTTGAATT CACCAAGCTGGACTCATTCATGGCGGATCTGACCACCTGGCTCAGTGCGGCGATGACGTATCAAGAGACTTGCTTGGACGGGTTCGTGAACGTGAGCACG ACGGCCGGGACGAAGATGAGGGAGTTCATGAACCGTTCGATGGAGCTCACAACCAACGGCCTAGATATCGTCACCGGATTGAACTCGCTGTTCAGTTCGC TCCAGCCGGATCTCTCTGGAGCTGGCCGCCGGCTACTTCAAGATGAGGGGAGGGCTAGTTCTCTCCCTGTTCTTGGACACGGTAGAAACGCTTTCTCTTC GTGGACCGCTTTCCCTTACTGGGTCCCCGAACGGTTCCGGAGGCTTCTCGAGGATTCCGACGACTCGTCGGAGAAGAAAGATAAGCATAAGGAGGATTCC GACGATGAGACTGATAAGGACAAGGACAAAGGCGAGAATGAAGAAAAGAAAAAGGACGATGACGGCCACAAAGAGGATTCCGACGACCAAACGGAGGAGG AAGAGAAGAAAGACAACAAGGCCAAGGACAAAAAGGACTTCTCCAAGTCTCCTTCCGAGATCGCCGACATTGTGGTGGCTAAAGACGGCAGCGGAGACTA CAAGACGATCAACGACGCGTTGGACCATTTGTTGGAGAAGAAGAAGAAGACCGGCGAGGTGGTCGTAATGTACATTAAGGCCGGAACCTACAAGGAGCAA GTTGAGGTGAAGAAGAAGTTGGACAATTTGGTCATGATCGGAGACGGAGCCAACAAGACTTTGATCACCGGGAGTAAGAATTTCATAGACGGCGTTAGCA CGTATCATACCTGTACCGTCGCTGTCGCCGCCGACTACTTTTTCGCCAAGAACCTCCGGATCGAGAACAGCGCCGGAGCGGACAAGCACCAGGCAGTGGC GCTCCGAGTCTCTGCCGATTTCGCCGTCTTCTACAATTGCACATTCGACGGGTACCAAGACACTCTGTACACCCACACCAAACGCCAATTTTACCGCTCT TGCACAATCTCCGGCACAATCGACTACGTCTTCGGCGATGCCAACGTCGTGTTCCAGAACTGTGTCTTCTTGATTCGGAAGCCGATGGAGAACCAGCAAT GCATCGTCACCGCTCAGGGCCGGAAGCAGCGCCACCAGCCGTCGGCGATCATAATCCAGAACGGCACGATCACCGCCCACCCGGACATGAAGGACGACTG GAAGAACTTCAAGTCGTACCTAGGCCGGCCATGGAAGAACTTTTCGAGGACGATAATCATGGAGTCGTTTATCGACGACCTGATTGATCCGGAAGGGTGG CTGCCGTGGATGGGCACCGTCGGGACGAAGACCTGCTGGTACGGCGAGTACGGGAACTACGGTCCCGGCGCCGACAAGAGCGACAGGGTGACGTGGCAAG GGATCAAGAAAATTACGCCTATGCACGCCGTGGACTTCACTCCCCAACGGTTCATCCGGTCCGACCCGTGGGTTAAACCGACAGGGATACCGTACGTTTC GTATATGGTTAAACCGGACACTTCACGGCGGGTCAAGTCGAGTTAA
AA sequence Show only first row Show all	>Lus10015211 pacid=23149557 polypeptide=Lus10015211 locus=Lus10015211.g ID=Lus10015211.BGIv1.0 annot-version=v1.0 MADDGGKKRFVIIGVSSFLLVAMVIAVTVGVLGASSSPLVGMVVAVPVGVGNQEEGANVGSGHPENIAASRKAITAICQPADFRKACEQSLEKSTGGNVT DPKELVKVAFKLAQKSIKDSLGKSDTWKELDSDAKTHEALVTCKELINMSVTELEDCLVKVSEDFEFTKLDSFMADLTTWLSAAMTYQETCLDGFVNVST TAGTKMREFMNRSMELTTNGLDIVTGLNSLFSSLQPDLSGAGRRLLQDEGRASSLPVLGHGRNAFSSWTAFPYWVPERFRRLLEDSDDSSEKKDKHKEDS DDETDKDKDKGENEEKKKDDDGHKEDSDDQTEEEEKKDNKAKDKKDFSKSPSEIADIVVAKDGSGDYKTINDALDHLLEKKKKTGEVVVMYIKAGTYKEQ VEVKKKLDNLVMIGDGANKTLITGSKNFIDGVSTYHTCTVAVAADYFFAKNLRIENSAGADKHQAVALRVSADFAVFYNCTFDGYQDTLYTHTKRQFYRS CTISGTIDYVFGDANVVFQNCVFLIRKPMENQQCIVTAQGRKQRHQPSAIIIQNGTITAHPDMKDDWKNFKSYLGRPWKNFSRTIIMESFIDDLIDPEGW LPWMGTVGTKTCWYGEYGNYGPGADKSDRVTWQGIKKITPMHAVDFTPQRFIRSDPWVKPTGIPYVSYMVKPDTSRRVKSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	0	1
					Lus10006918 [exp]	3.3	0.9973
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029391 [exp]	4.6	0.9652
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	4.7	0.9973
					Lus10027066 [exp]	5.7	0.9973
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	6.6	0.9973
					Lus10015798 [exp]	6.9	0.9025
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	6.9	0.9639
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017701 [exp]	7.2	0.9557
					Lus10040397 [exp]	7.4	0.9973
					Lus10007508 [exp]	8.1	0.9973

Compare expression of checked genes

Lus10015211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.