Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27000 914 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 914 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 842 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 660 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 542 / 3e-179 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 514 / 2e-167 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 513 / 1e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 494 / 2e-159 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 485 / 5e-157 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 337 / 4e-100 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029865 [exp] 1285 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 1028 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10009851 [exp] 900 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 698 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10001306 [exp] 628 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10018049 [exp] 585 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 583 / 0 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10035442 [exp] 541 / 3e-177 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10031058 [exp] 539 / 9e-176 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011500 [exp] 1036 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 1006 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 931 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 922 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 709 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 685 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 527 / 2e-171 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 523 / 7e-170 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 498 / 4e-161 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 484 / 2e-155 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10015212 pacid=23149609 polypeptide=Lus10015212 locus=Lus10015212.g ID=Lus10015212.BGIv1.0 annot-version=v1.0 ATGGCGACGGAACAAGCTTCTTCTTCTTCTTTCTCTCTTGTTTCAATTGTGGAGGGTGTTCTTCAGCAGCATGGAATCTGCCGGAAGGATTCGAGAAAAC TCGACGAGGCTTCTGCTAGACGGTATGAAGCGGCGGAGTGGCTACGAAAGACGGTTGGAGTCGCCGGAGGGAGAAATGATTTGCCGTCTCAGCCGTCGGA GGAGGATTTCAGGCTTGGATTGAGGAGTGGGATCATATTGTGTAACGTGTTTAACAAGGTTCAACCAGGAAGAATAGCTAAGGTAGTAGAAGGTCCTGGT GATTCGTTTGTTACGACGGATGTAGCTCCACTGTCTGCGTTTCAGTACTTTGAGAATTTGAGGAACTTCCTTGTAGCTGCTGAGGAGCTAGGGCTTCCAT CTTTTGAGAACTCTGATCTGGAGCAGGGAGGAAAGGCAGCAAGGGTTGTGAACTGTGTTTTGGCATTGAAATCATACCATGAGTGGAAGCAAAGTGGAGG AACCGGGCAATGGAAGTACGGTGGGAACCAGAAATCAGGAGCCTCGACTTTTGGGAAGTTCACCAGAAGGACGTCCGAGCCATTTGGGAATTCGTTGTCA AGTATCTCGCAGTCGGGTGCTGATTCTGGCAATGATCATACTGAAGCAGCCGGACATCGTTCCTTGAACACGCTAGTCCAGGCTGCTCTTTCGCATAGAA ACAAGGAAGAAATACCTAATATTGTAGAATCTATGCTAAGTAAAGTCATGGAAGAGTACGAGCATCGGCTAGCAAGTCAAAGTGAAGCGATGAAGTCAAC AGAGAAGGAAGTGGCATTATCAAATACAGAAGCTTCTCCTCTGGAATCTCGTTCAAGCGATATAAAGGTTCAAGCGAACAATCTGCAATATCAGGAGGCA TCTTACCCCGAGTGGAACAGTAGGAGTCAGGAATCGAGACGACAGCTTGTTAAACAGCAAGAGATGTACATTCAGGAGTTGCGATGCAACCTCCAGGTTA CAAGAGCAGAAATGCAATTTCTGCAGACCAAGCACTTGGGGGAGTTCAACAATCTAGGGAAGCACTTGTACGGTCTAGCTCACACGGCTTCGGGATATCA AAGAGTCCTTCAAGAAAACCGCAAGTTGTACAATCAAGTGCAAGACCTGAAAGGTAACATCAGAGTATACTGTCGAGTGAGACCATTTTTACCGGGGCAA GTGAGTCGATTCAGTACCGTGGACCATATAGAGGAGGGAAACATCACCATTGCCACTCATTCTAAGTATGGGAAAGAAGGAAGAAAAAGCTTCAGTTTCA ACAAAGTTTTTGGGCCTATGGCTACTCAAGCCGAAGTATTCGTGGATACACAACCCTTGGTCCGTTCTGTTCTTGATGGATATAACGTCTGTATCTTCGC TTATGGCGAAACAGGATCAGGGAAAACTTATACTATGAGCGGTCCGAACAAGCTCACGGAAGAAAGCCTAGGTGTCAACTACAGGGCATTGGGTGATCTT TTTCTCTTGTCGGCTCAGAGAAAAGAAGTTATAAGCTACAAAATTTCATGCCAAATGCTTGAGATTTACAATGATCAAGTCAGGGATCTGCTCACCAGTG ATGGTCTCAGTTCCGGCAATGGAATGAATGTTCCTGATGCTGTCTTGGTGCCAGTATCGTCGACATCTGATGTCATAAACTTGATGAACACTGCATATAA GAATCGTGCAGTGAGTGCCACAACGATGAACGAACGGAGTAGTCGATCCCACAGTTGCCTCACTGTTCATGTTCAAGGCAAGGACCTGACATCGGGAAAC GTAATTCGTTGTTCCATGCATCTTGTCGACCTTGCTGGCAGCGAAAGAGTTGACAAATCCGAGGTGACTGGAGACAGACTGAAGGAGACTCAACATATTA ACAAGTCTCTTTCAGCTTTAGGAGATGTGATTGCTTCTCTTTCAAGTAAAAGCACACATGTTCCTTACAAGAACAGTAAATTAACACAGTTACTCCAAGA TTCGCTTGGTGGGCAATCCAAGATACTGATGTTTGTCCATATAAGTCCCGAGTTCGACGCTCTTGGAGAAACACTCAGTACCTTGAAATTCGCTGAGCGG GTTGCTACTGTCGAGCTCGGTGCTGCTGAGGTTAACAAGGACAGCACAGAAGTTAAAGATCTTAAAGATCAGATTGCTAGCCTCAAGGCAGCTCTAGCAA GGAAAGGAGATGTGGCTCAAGCAGTCTCAAAGAATTCCTCATTCATGTTACAGAAAAGAAGCTTGGACTCACATTACCTACTATCGAACCTATCTACGCA GTCAGGCAGCAGTGAGAGGCCACTCGATAACGGGAAGGATGACTTCGATTTTGATCGCGAAGTAATGTCGAATGATGGCTCCGACGATCGGGATGCTGGC ACAAGTGATTGTTCGGAGGCGGATGCGATCGCATCGCAGCCGTCTAATCTTCCTCGATTGACCAGCAGCAACATTCCCACTTTGACAGGAGCTAAAGTGA AGAGGACAAATCCTAGGCAAGTAAAGAACACAGAGATCAGCAGAAGAAGTATGATCCCATCCTTGATTCCTTCACCAGCATCAACTGGCAAGAAAGTACC AAATGGGAATAGCTTGGGACTGAAGAAACCTCTGAAGCAAAAGTTTTTACCTGATGGGAAGAGGAAAACTGGGCTTGCAAAGTGA
AA sequence Show only first row Show all	>Lus10015212 pacid=23149609 polypeptide=Lus10015212 locus=Lus10015212.g ID=Lus10015212.BGIv1.0 annot-version=v1.0 MATEQASSSSFSLVSIVEGVLQQHGICRKDSRKLDEASARRYEAAEWLRKTVGVAGGRNDLPSQPSEEDFRLGLRSGIILCNVFNKVQPGRIAKVVEGPG DSFVTTDVAPLSAFQYFENLRNFLVAAEELGLPSFENSDLEQGGKAARVVNCVLALKSYHEWKQSGGTGQWKYGGNQKSGASTFGKFTRRTSEPFGNSLS SISQSGADSGNDHTEAAGHRSLNTLVQAALSHRNKEEIPNIVESMLSKVMEEYEHRLASQSEAMKSTEKEVALSNTEASPLESRSSDIKVQANNLQYQEA SYPEWNSRSQESRRQLVKQQEMYIQELRCNLQVTRAEMQFLQTKHLGEFNNLGKHLYGLAHTASGYQRVLQENRKLYNQVQDLKGNIRVYCRVRPFLPGQ VSRFSTVDHIEEGNITIATHSKYGKEGRKSFSFNKVFGPMATQAEVFVDTQPLVRSVLDGYNVCIFAYGETGSGKTYTMSGPNKLTEESLGVNYRALGDL FLLSAQRKEVISYKISCQMLEIYNDQVRDLLTSDGLSSGNGMNVPDAVLVPVSSTSDVINLMNTAYKNRAVSATTMNERSSRSHSCLTVHVQGKDLTSGN VIRCSMHLVDLAGSERVDKSEVTGDRLKETQHINKSLSALGDVIASLSSKSTHVPYKNSKLTQLLQDSLGGQSKILMFVHISPEFDALGETLSTLKFAER VATVELGAAEVNKDSTEVKDLKDQIASLKAALARKGDVAQAVSKNSSFMLQKRSLDSHYLLSNLSTQSGSSERPLDNGKDDFDFDREVMSNDGSDDRDAG TSDCSEADAIASQPSNLPRLTSSNIPTLTGAKVKRTNPRQVKNTEISRRSMIPSLIPSPASTGKKVPNGNSLGLKKPLKQKFLPDGKRKTGLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	2.0	0.9448
AT5G42710			unknown protein		Lus10016315 [exp]	3.0	0.9491
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	3.3	0.9190
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	4.0	0.9354
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	4.5	0.9214
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	5.0	0.9321
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	5.3	0.9292
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	7.5	0.9374
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	10.1	0.9117
AT2G21300			ATP binding microtubule motor ...		Lus10031086 [exp]	11.4	0.9181

Compare expression of checked genes

Lus10015212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.