Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05670 361 / 6e-110 RING/U-box protein (.1) AT4G10940 67 / 3e-12 RING/U-box protein (.1) AT1G67180 69 / 6e-12 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT5G53910 53 / 2e-07 RING/U-box superfamily protein (.1) AT3G01460 54 / 7e-07 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G58610 50 / 1e-05 PHD finger transcription factor, putative (.1) AT2G39100 48 / 2e-05 RING/U-box superfamily protein (.1) AT5G24330 48 / 3e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT2G37520 47 / 6e-05 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G40250 45 / 0.0001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031468 [exp] 961 / 0 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10000086 [exp] 800 / 0 AT3G05670 162 / 9e-44 RING/U-box protein (.1) Lus10013501 [exp] 83 / 5e-16 AT3G05670 118 / 1e-27 RING/U-box protein (.1) Lus10032402 [exp] 67 / 9e-11 AT4G10930 553 / 3e-179 unknown protein Lus10023068 [exp] 66 / 2e-10 AT4G10930 586 / 0.0 unknown protein Lus10030864 [exp] 56 / 2e-07 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10001535 [exp] 54 / 3e-07 AT4G10940 189 / 4e-59 RING/U-box protein (.1) Lus10030625 [exp] 55 / 4e-07 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 54 / 7e-07 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021000 [exp] 460 / 1e-148 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 451 / 9e-145 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.001G089900 [exp] 64 / 4e-10 AT4G10930 506 / 5e-160 unknown protein Potri.004G106000 [exp] 64 / 5e-10 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.017G072460 [exp] 54 / 4e-07 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G009632 [exp] 53 / 5e-07 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 52 / 1e-06 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.003G126600 [exp] 50 / 8e-06 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.008G215200 [exp] 47 / 3e-05 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) Potri.010G092300 [exp] 47 / 5e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10015213 pacid=23149534 polypeptide=Lus10015213 locus=Lus10015213.g ID=Lus10015213.BGIv1.0 annot-version=v1.0 ATGGGTAGGGGAGGGAAAGTTGTGGGTCAAAGGAATTTCAAGAAGAGGGTTAGGTCCAACGATGAGGGGTCTGATGATTCGGACGAGGATTATGTGATTG AGAATGAGGAACATGGATCAGGGGACGAATCGGTGGAGTATGCAAGTTCGGGAGAAGAGTATTGCTCTTCTGAGGAGGATGAAGAGGAGCAAGGGAGGAG GAAAAAAGTGTCTAGGAAGGTGGTTGGTTCGAATATTCGGAGGAAGAGGAGTTCGTTAGGTCGAAAGAGAGGGAAGGCGTCGTACGAGGAGGAAGACGAA GATTATGTTAAGGTTGAAGATGATGAGAATGTTCGAGCTAACAAGAGGAGTAGGAGCAAGAGTTGTTTAGAGAACGGGAAATCGGGAGCTAATAGTTCGC GGAAGAGGAGAGTGGTGTCGTATGAGGAAGACAATGATTATGTTGACTTTGAAGATGATGACTATGATGATGAGGATGATGACAAGGATGACGAGGATTA TGTTAAGGTTCGAGCTAGTAAGAGGAGTAAGGGTTGCTTAGGGAACGGGGCTCCGGTTTCGAGGAAGATGAGGAAGAAGGGTTTGTATGAGGAAGATGAT GACGAAGATTATGTTAAGGTTGAAGATGACGAGAATGGTGATGATGATGATGGTGTTAGTGTTCAAGCTAACAAGACGAGTAGGAGCAAGAGTTATTTAG AAAATGGGAAATGGGGAGCTAATAGTTCGCGGAAAAGGAGAATGGTGTCGTATGAGGAAGATGAAGACAACGAAGATTATGTTGATGGCATTGATGAGGA GGAAGATGATCACGATGATGATGTTAAGGTTCGATTCGATACGAGGAGGAGGAACAACGGTTTTTTAGAGAACGGAAAGACCGGAGGTAAGACTTCTAGG AAGAGGAAGGGTTCTGGTGAGGAAGATGAAGACGAAGATTATGTTAACGTTGAGGATGGTGAAGAGGAAGAAGAAGATGATGATGACTATGATGGTGAGG ATGAAGAGTTAGCATTATGTGAAGAAGAAGAAGACGATTGCTTAGACGAGGAGGAGGAGGAAGAAGAAGAAGTAGTTGTTGCGAAAATGGCAAAGAGGAA GAAGACTAGCAAGAAGCGAGGAGCTAGGACAAATTCGAGAGTTGTGAAAAAGTCTGCTGCAAAGAAAGGCAGGTTGAGGAAGAAAGTGAAGTATGAAGAA GAAGAAGAAGAAGAAGATGATGATGATTTTGTCGACTGCAACTTATCTGCAAGAGAGAAGAGTAAGAAAATGTCAGGTTCATCAAGGAGAAGGAAGTACA CAGTGAACTCGGATTCGGATTTCGTGGCATCCGAAGAAGAGAGGGAACAAGTCAAGCCTCCTGTGGCAAGGAAGGGGAAAGAGAAGGTGAAGGAATGGGA ACCAGAGGCGGCAGCGAAACAAGTTTGTGGAATCTGTTTTACGGAAGAGGATAAGAGAAGGTTAAGAGGAACACTAAACTGCTGCAGCCACTACTTCTGC TTCAAGTGCATTATGGAGTGGTCGAAAGTTGAGTCTCGTTGCCCCTTGTGCAAGCAAAGGTTTACGACGATCACTAAGAACGGGAGATTGTCGGGGATGG ACATGAGAAGTGTGGTGATCGAAGTCCCCAAGCGTGATCAGGTCTATCAACCAACTGAAGAGGAAATCAGAAGCTTCATTGATCCTTATGAGCATGTGCG ATGCACAGAATGCCACCAAGGTGGAGATGATGCTCATATGTTGCTGTGCGACCTCTGCGATTCTCCGGCTCATACCTACTGCGTCGGTCTTGGTCAACAA GTCCCCCCAGGGAACTGGTATTGTGACGGTTGCAGGCCTGCCGGTTCCTCAAGCTCCCAGAACCAACCAGACAATATCCCTTCCGATCAAAGACCGATGC TGGTAAGTAACAGGTTGATCGGACAGACTCCACCGCCACCCACTGTGTCTAGTTTGGAAGACAGATCGCATCCGATCTCACAGCCTTCCACATTTCCTCA AGCGTTCGGGTCTCCGACGATGTCTCAAGGGCTTCGAATGGGAGATTCCTCAACTTCGGGAACAGGTGCACAGACGCTATGGAGCAGGCGTGAGATTCAA CGCCGTATACAGAACCTTCTATCGAGCAGAATGAATATGACAGCTGGCGGAGACGATGGAGTCCAAGCTGCAACGAATATTCAACGGATACAGAGTCTTC TATCGAGCAGAATGAACTCGATGGCTGGTGGAATGGGCGGGATCCGAGCTCCCACCAGTGTTTACAGTGGCTTTCCAGGCGCTCGAATCGCTCAGCACGG AGAAATGCCTGCTCGGAATTCGGTCCCTTCTTCTTTAATTGGTAATAATAGGGAATTTTTAGGGTTTAGAGCAAACCAATGGAGGCCAGCTCAGCAGCAG GGAGCATCAACTGTAGCAGCAGCCATTGAGAGGCCTGTCAATTTGACATTATGGCCTGAAAACTCCGGGATTAATCCGGTTCCGGGTAATCTATATAGCA ACCGACCGACCACCAATCGTCTCGGTTTTGATTTCGCACCTTATGGTGTTGACAACAACAACAATCAATTATACATCTTGAAGGAACAGCTGCAGTCTAT GATTACTGCCCATTTGAAGGCCTTGTCCTTAGGTATCGAACTGGGACAAGAAACCATGAATGGGATCGTTAGGACTTCGACGAACATAGTCATGGCATAT TGCGGGCTAGAGCACGAGAGAGACGAAGTCCGACCTTTACCGTCAGTGCCATCGAGATGCTCCCATGTCGATAGAATCGCTTCTGGACAGACCAGCATAA TGAGAGGTTTTTGCTCATCTTGCTTTGAATCAATTGTAAGCGACGTAGTGAAGAATATACTGGATTCAAGGGTTCCAACAAGACTGCCACAATGGCTTAG CCTAGGATTATAG
AA sequence Show only first row Show all	>Lus10015213 pacid=23149534 polypeptide=Lus10015213 locus=Lus10015213.g ID=Lus10015213.BGIv1.0 annot-version=v1.0 MGRGGKVVGQRNFKKRVRSNDEGSDDSDEDYVIENEEHGSGDESVEYASSGEEYCSSEEDEEEQGRRKKVSRKVVGSNIRRKRSSLGRKRGKASYEEEDE DYVKVEDDENVRANKRSRSKSCLENGKSGANSSRKRRVVSYEEDNDYVDFEDDDYDDEDDDKDDEDYVKVRASKRSKGCLGNGAPVSRKMRKKGLYEEDD DEDYVKVEDDENGDDDDGVSVQANKTSRSKSYLENGKWGANSSRKRRMVSYEEDEDNEDYVDGIDEEEDDHDDDVKVRFDTRRRNNGFLENGKTGGKTSR KRKGSGEEDEDEDYVNVEDGEEEEEDDDDYDGEDEELALCEEEEDDCLDEEEEEEEEVVVAKMAKRKKTSKKRGARTNSRVVKKSAAKKGRLRKKVKYEE EEEEEDDDDFVDCNLSAREKSKKMSGSSRRRKYTVNSDSDFVASEEEREQVKPPVARKGKEKVKEWEPEAAAKQVCGICFTEEDKRRLRGTLNCCSHYFC FKCIMEWSKVESRCPLCKQRFTTITKNGRLSGMDMRSVVIEVPKRDQVYQPTEEEIRSFIDPYEHVRCTECHQGGDDAHMLLCDLCDSPAHTYCVGLGQQ VPPGNWYCDGCRPAGSSSSQNQPDNIPSDQRPMLVSNRLIGQTPPPPTVSSLEDRSHPISQPSTFPQAFGSPTMSQGLRMGDSSTSGTGAQTLWSRREIQ RRIQNLLSSRMNMTAGGDDGVQAATNIQRIQSLLSSRMNSMAGGMGGIRAPTSVYSGFPGARIAQHGEMPARNSVPSSLIGNNREFLGFRANQWRPAQQQ GASTVAAAIERPVNLTLWPENSGINPVPGNLYSNRPTTNRLGFDFAPYGVDNNNNQLYILKEQLQSMITAHLKALSLGIELGQETMNGIVRTSTNIVMAY CGLEHERDEVRPLPSVPSRCSHVDRIASGQTSIMRGFCSSCFESIVSDVVKNILDSRVPTRLPQWLSLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	0	1
					Lus10031351 [exp]	1.4	0.8941
AT1G16210			unknown protein		Lus10012520 [exp]	1.4	0.8952
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	3.0	0.8461
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	3.9	0.8939
					Lus10041517 [exp]	4.0	0.8757
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	5.5	0.8707
					Lus10014600 [exp]	5.5	0.8374
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	5.9	0.8601
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	6.9	0.8357
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	7.2	0.8071

Compare expression of checked genes

Lus10015213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.