Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26990 156 / 4e-48 Drought-responsive family protein (.1) AT3G05700 150 / 1e-45 Drought-responsive family protein (.1) AT1G56280 130 / 3e-38 ATDI19 drought-induced 19 (.1.2) AT3G06760 99 / 7e-26 Drought-responsive family protein (.1.2) AT5G49230 82 / 3e-19 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT1G02750 72 / 2e-15 Drought-responsive family protein (.1.2) AT4G02200 55 / 2e-09 Drought-responsive family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031467 [exp] 298 / 7e-104 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10017097 [exp] 95 / 2e-24 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10010305 [exp] 89 / 1e-21 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10037819 [exp] 88 / 2e-21 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10037717 [exp] 90 / 6e-21 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10013420 [exp] 82 / 5e-19 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10001462 [exp] 67 / 2e-13 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10002441 [exp] 63 / 6e-13 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10015412 [exp] 56 / 3e-09 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011200 [exp] 236 / 3e-79 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.005G020900 [exp] 225 / 4e-75 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.010G000800 [exp] 127 / 8e-37 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 117 / 9e-33 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.014G125500 [exp] 83 / 1e-19 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.002G200500 [exp] 77 / 2e-17 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1) Potri.011G057200 [exp] 58 / 2e-10 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.019G027300 [exp] 56 / 2e-10 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.012G086500 [exp] 52 / 2e-08 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10015214 pacid=23149512 polypeptide=Lus10015214 locus=Lus10015214.g ID=Lus10015214.BGIv1.0 annot-version=v1.0 ATGGATGGTGATTCGTGGAGCGCTCGTCTCTCTTCTGCTTCCAAGAGATACCAATCAGCTCTCCAATCCCGATCTGATATGTTCATGGGATTTGAAGAAA TCGACGTTGATGATGATATGAGGGAGGAGTTCCCGTGCCCTTTCTGTTCGGACTACTTCGATATAGTCGGGTTGTGTTGTCACATAGATGATGAGCATCC CGTGGAAGCGAAGAACGGGCGCAAGAGGAAATCGCGTAGAGGACATTCGAGCCTTTCCTTGTTGCGGAAAGAATTACGAGAAGGAAATCTGCAGTCCCTT TTTGGGTCCTCGTGTATAGTTTCGTCTTCCTCTTCTTCAAACACTGCTCCCGACCCCTTGTTGTCGTCCTTCATCTTACCAATGGGAGACGATTTCGCCA GTCCTCACCCCTCTTTCTCGACCGACACAAGTTCCACCAAGAAAGGAGGCGCCACGGCAGAGAGTGTTTCAGAAAGAAATACGACGAAGTCGCCTCCATT GTCTGTCAAGGATAAGGAGGAGAAAGCGAGAAGGAGCGAGTTCGTTCAAGGGATGTTATTGTCCACCATTTTCGGCGATGTTTCATAA
AA sequence Show only first row Show all	>Lus10015214 pacid=23149512 polypeptide=Lus10015214 locus=Lus10015214.g ID=Lus10015214.BGIv1.0 annot-version=v1.0 MDGDSWSARLSSASKRYQSALQSRSDMFMGFEEIDVDDDMREEFPCPFCSDYFDIVGLCCHIDDEHPVEAKNGRKRKSRRGHSSLSLLRKELREGNLQSL FGSSCIVSSSSSSNTAPDPLLSSFILPMGDDFASPHPSFSTDTSSTKKGGATAESVSERNTTKSPPLSVKDKEEKARRSEFVQGMLLSTIFGDVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	0	1
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	1.0	0.8933
AT3G09085			Protein of unknown function (D...		Lus10017182 [exp]	2.2	0.8675
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	7.6	0.8779
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	8.7	0.8719
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	9.2	0.8708
					Lus10007301 [exp]	9.5	0.8528
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	10.6	0.7935
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	10.7	0.8465
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	10.8	0.8546
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	13.7	0.8510

Compare expression of checked genes

Lus10015214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.