Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26980 200 / 1e-63 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT4G02195 196 / 8e-62 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT3G05710 192 / 2e-60 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT5G46860 45 / 1e-05 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 42 / 0.0002 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031466 [exp] 247 / 1e-81 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10029864 [exp] 235 / 6e-77 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 228 / 7e-75 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10000311 [exp] 50 / 1e-07 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 50 / 8e-07 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10040094 [exp] 49 / 9e-07 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 49 / 9e-07 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10042527 [exp] 47 / 7e-06 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 46 / 1e-05 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020800 [exp] 223 / 2e-72 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 210 / 2e-67 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.002G200400 [exp] 201 / 6e-64 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.001G138500 [exp] 46 / 8e-06 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 45 / 2e-05 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.019G030800 [exp] 45 / 2e-05 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.013G053200 [exp] 44 / 5e-05 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.014G145200 [exp] 43 / 7e-05 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10015215 pacid=23149517 polypeptide=Lus10015215 locus=Lus10015215.g ID=Lus10015215.BGIv1.0 annot-version=v1.0 ATGGCGACGAGGAACCGGACGTTGATATTCAGAAAGTACAGAGACGCGTTGAAGAGCGTACGGATTCCGACGAGCTCCTCTGCCTCCGCGGCTTCGACGA GCTCTTCTTCCGGAGGAGGTGGTCCTGTGATTGAGTTGGTTAGCACTTCGCTTCTCAATCATAAACGTTCTTATGCTCCTCTCAGTACTGAAGATCCTGG CAATTCCAGTAAGGGAGCAGTAACAGTCGGTCTCCCACCTGCCTGGCGATCCCTTGCCACTGACCTCCAGAACCTTTCAATGGAGCTTCGCAAGAAACAA TCGACTTACTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGAAGGGGATGACTTGGAGATGAACCTTAATGGCAATAGATCCCGAATGGACGATGATG ATGGCTTAGATGACATGGTCGTGGAGTCTGTAAATGAACTTGCTCAAATCATGAAGGACTTGTCAGTACTTGTGATAGACCAGGGTACGATCGTTGATAG AATAGACTACAACGTTCAGAACGTCGCAACTACAGTCGAAGACGGGCTTAAACAGCTGCAGAAGGCCGAAAGATCGCAAAAGCAAGGTGGAATGGTAATG TGTGCGACTGTGCTTGTGATCATGTGCTTCATCATGTTGGTTCTCCTGATCCTTAAGGAGATATTGTTCTGA
AA sequence Show only first row Show all	>Lus10015215 pacid=23149517 polypeptide=Lus10015215 locus=Lus10015215.g ID=Lus10015215.BGIv1.0 annot-version=v1.0 MATRNRTLIFRKYRDALKSVRIPTSSSASAASTSSSSGGGGPVIELVSTSLLNHKRSYAPLSTEDPGNSSKGAVTVGLPPAWRSLATDLQNLSMELRKKQ STYLKRLRQQKEGQEGDDLEMNLNGNRSRMDDDDGLDDMVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNVQNVATTVEDGLKQLQKAERSQKQGGMVM CATVLVIMCFIMLVLLILKEILF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10015215 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	10.7	0.6450
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	18.0	0.6162
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	21.0	0.6187
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	42.7	0.5665
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	47.1	0.5670
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	47.5	0.5279
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	48.3	0.5651
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	59.1	0.5652
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	62.7	0.5442
AT4G12010			Disease resistance protein (TI...		Lus10007030 [exp]	83.7	0.5136

Compare expression of checked genes

Lus10015215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.