Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26940 245 / 1e-79 DPD1 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031465 [exp] 618 / 0 AT5G26940 259 / 5e-85 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020600 [exp] 325 / 8e-111 AT5G26940 291 / 2e-97 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10015216 pacid=23149601 polypeptide=Lus10015216 locus=Lus10015216.g ID=Lus10015216.BGIv1.0 annot-version=v1.0 ATGAGGCCGTTCCCAATGTGTTTCTCTATACTGCAAGCCCCTCGGTATGGGATCCTGGCCTTAACGAGTCTCTGGCAGGAAAGCTTCCACCGATCTGACA GGAAAACATCGGGAAGCAATAGGAGGTTCACTTCCATTGGTTCGAAACATAATGCACTTACTGAAGGAGGATACAGTAGAAGATGGATTAGAACAAAACC GGCTGAAGACAAAAAGATGGTAGAAAAACTAGAAATCACAACCGCCACCAGGCACCAAATACTCGACGAAGAAGAAGCTGTTTCGTTGAGCGTAAACAAG GTTATACCGTTCGGGCCTTCTGATATAAGACAGCAGCTTGCTGATAGTAAAGACCTGGCCAAGCTATTGACTGTGCTGGTCTTCGATCTCGAGACTACCG GTTTCAGCAGGACGACCGAGAGGATTGTTGAGATCGCGTTTCAGGACCTGGGAGGAGGAGAAAACAGCACGTTCGAAACGCTCGTGAATCCCGAACGCTT CATTTCTAACTCCCATATCCATGGCATTAGCAACGACATGGTCACCCGAACCGGTGTTCCTAGGATGAGAGAGTTGATACCGATCCTGCTGAAGTTTGTC GAAAGCCGAAGGAAACCGGATGGCTACGTGCTGATGGTAGCTCACAACGGCCGAACATTCGACGTCCCCTTCCTTAAAAGCGAATTCGAGCGATGCAATG TTGAATTTCCTTCGAGTTGGCTTTTCTATTGCACACTCCCTCTAGCTCGCCAAGCATTGAAGTTAGAAGATTCAAAGCCAAAGATATCTCTGGAAGCTCT CAAGCAAAGGTACAAGATCGTCGCAGAAGGAAAAGCACACAGAGCCATGGCAGATGTAAAGGCACTGTCGTTGATCCTCCAGAGACTGACTTTTGAGCTG AAAACTCCGCTTTCGGGGCTGGTCAAAGGCTCCTTCATGGCCTCCGAGCTGGGGAAGTCGAGCTCAAAGAAGGAGAAGCCCGGCAATAAGCTGAAGAACT CCAAGTAG
AA sequence Show only first row Show all	>Lus10015216 pacid=23149601 polypeptide=Lus10015216 locus=Lus10015216.g ID=Lus10015216.BGIv1.0 annot-version=v1.0 MRPFPMCFSILQAPRYGILALTSLWQESFHRSDRKTSGSNRRFTSIGSKHNALTEGGYSRRWIRTKPAEDKKMVEKLEITTATRHQILDEEEAVSLSVNK VIPFGPSDIRQQLADSKDLAKLLTVLVFDLETTGFSRTTERIVEIAFQDLGGGENSTFETLVNPERFISNSHIHGISNDMVTRTGVPRMRELIPILLKFV ESRRKPDGYVLMVAHNGRTFDVPFLKSEFERCNVEFPSSWLFYCTLPLARQALKLEDSKPKISLEALKQRYKIVAEGKAHRAMADVKALSLILQRLTFEL KTPLSGLVKGSFMASELGKSSSKKEKPGNKLKNSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26940		DPD1	defective in pollen organelle ...		Lus10015216 [exp]	0	1
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	1.4	0.8828
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	17.7	0.8551
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	18.3	0.8043
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	24.2	0.8291
AT2G25270			unknown protein		Lus10001929 [exp]	26.2	0.8328
AT2G33400			unknown protein		Lus10011782 [exp]	30.6	0.8161
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	37.6	0.8223
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	37.7	0.8285
AT3G52110			unknown protein		Lus10029522 [exp]	39.3	0.8226
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	47.2	0.7920

Compare expression of checked genes

Lus10015216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.