Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32360 662 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT5G53460 66 / 6e-11 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031463 [exp] 932 / 0 AT4G32360 659 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10000390 [exp] 65 / 1e-10 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 48 / 1e-05 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118801 [exp] 702 / 0 AT4G32360 666 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.012G011700 [exp] 66 / 6e-11 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.015G017500 [exp] 62 / 9e-10 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10015217 pacid=23149522 polypeptide=Lus10015217 locus=Lus10015217.g ID=Lus10015217.BGIv1.0 annot-version=v1.0 ATGGCGATGGTCGGAGCAAGGACATGGGTTTCCAGAAGTTTCTCAACTCTTCTTCCTTCTAATCATCTTCGTGTCTGTGTCGTCGGTAGTGGACCTGCCG GCATGTACACCGCTGAGAAAATGCTGAAGGCGCACCAAGGAGCAGAAGTTGACATCATCGATCGATTGCCCACGCCTTTTGGATTAGTGCGGTCTGGAGT TGCCCCCGATCATTCTGACACCAAGATTGTGACGAATCAGTTCTCGAGGGTGGTCACGCAAAACGAAAGATGCTCGTTTTTCGGCAATGTAGCTCTTGGA TCTTCTGCCTCGCTTTCCGAGCTTCGTGAATTGTATGATGTGGTTGTTCTTGCATATGGTGCTGAAAGTGACAGAGATTTGGGCATCCCTGGAGAGGATC TGGCGGGGATATACTCGGCCAGAGAATTCGTTTGGTGGTATAATGGGCATCCGGATTGCAGAAACTTGAGTCCTGATTTGACGAATACCGATACAGCTGT TATACTTGGACAGGGAAACGTAGCTCTCGATGTTGCTCGTGTCCTTCTACGGCCAACAGAGGAGTTGGCAACAACTGACATTGCCAGTCATGCTTTGGCC GCTTTGGAACAAAGCTCCATAAGAAAAGTCTATTTGGTTGGACGACGTGGGCCAGCTCAAGCCGCTTGCACTGCGAAAGAACTACGAGAAATTCTTGGAA TAAAGAACTTGCATATTCACATAAAGGAAGAAGATTTACGTAAAAGCTCGGAAGATGAGGAAGAACTGAAGAATAACCGTATCAGAAGGAGGGTTTACGA GTTGCTTTCGAAAGCTGCCAGCTCCGGACCTGCCCTTCCTAGTTCGGATCAACGTGAGCTTCACTTTGTGTTCTTTCGAAAGCCGGATAGTTTTTCCGAG TCAACTGACTTGCCAGGGCATGTTTCCAGCGTGAACTTCGAGAAGACAGTTCTCAAATGTGTTGGCTCCGGAAACCAGATTGCGGTTGGCAGTGGACAGT TTGAGGACCTTGACTGCGGGATGGTTTTGAAGAGCATTGGCTACAAATCAGTGCCCGTTCCCGGTTTACCATTCGATCATCGAAAAGGGATAGTCCCAAA TACAGGGGGGTGGGTTATTAGTGATACTTGTGAAGATCCCGATACCAAAATCGAGAATGGTTTATACGTATGCGGGTGGCTGAAGAGAGGACCGACTGGC ATTATCGGAACAAACCTACACTGTGCAGAAGAAACTGTTGCAAGCATATTGCATGACCTTGAACACGGTTTGATAGTGTCACCATCGAAGAAGCCGGGCA GGGAAGGGCTCGTAGAGTTACTAGATGGTAGGAACGTGAGAGTTGTGGACTTCAACGGGTGGGAAATGATAGACTGCGAAGAGAGGAAGCTTGGGAGTGA GAGAAACAAGCCCAGGGAGAAGTTATGCAGCTGGAAGGATTTATTAACAGTTTGCAACAACTGA
AA sequence Show only first row Show all	>Lus10015217 pacid=23149522 polypeptide=Lus10015217 locus=Lus10015217.g ID=Lus10015217.BGIv1.0 annot-version=v1.0 MAMVGARTWVSRSFSTLLPSNHLRVCVVGSGPAGMYTAEKMLKAHQGAEVDIIDRLPTPFGLVRSGVAPDHSDTKIVTNQFSRVVTQNERCSFFGNVALG SSASLSELRELYDVVVLAYGAESDRDLGIPGEDLAGIYSAREFVWWYNGHPDCRNLSPDLTNTDTAVILGQGNVALDVARVLLRPTEELATTDIASHALA ALEQSSIRKVYLVGRRGPAQAACTAKELREILGIKNLHIHIKEEDLRKSSEDEEELKNNRIRRRVYELLSKAASSGPALPSSDQRELHFVFFRKPDSFSE STDLPGHVSSVNFEKTVLKCVGSGNQIAVGSGQFEDLDCGMVLKSIGYKSVPVPGLPFDHRKGIVPNTGGWVISDTCEDPDTKIENGLYVCGWLKRGPTG IIGTNLHCAEETVASILHDLEHGLIVSPSKKPGREGLVELLDGRNVRVVDFNGWEMIDCEERKLGSERNKPREKLCSWKDLLTVCNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	0	1
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	9.4	0.8112
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	9.9	0.8014
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	12.8	0.7330
AT1G29220			transcriptional regulator fami...		Lus10029236 [exp]	15.2	0.7543
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	17.5	0.7698
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	21.0	0.7841
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	25.0	0.7342
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	34.6	0.7839
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	38.6	0.7532
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	42.4	0.7507

Compare expression of checked genes

Lus10015217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.