Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031461 [exp] 420 / 1e-143 ND 41 / 0.001 Lus10031397 [exp] 95 / 2e-23 ND / Lus10005187 [exp] 86 / 6e-18 ND / Lus10005188 [exp] 86 / 7e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015218 pacid=23149565 polypeptide=Lus10015218 locus=Lus10015218.g ID=Lus10015218.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTTCGCCATGCCCGCTGCTGCTACTTTCTCGTCGGTGGCATCATCGCCACCGCAACACTCTAAAAAGAACATGACAACGATGCTTACTG CTAGCCTCAAAACTAGCTCAAAGGTGTCGGTTTCTGCTGCTGTTGTCTCCTTCAACAAGCAGCAGGATGGAGGTATTCGGCGCACCTACTTCGCCAAGCA GCAGGATGGAGGTCTCAGACAAGGCTACTTCGCCAAGGAGAAGGACGGAGGTCTTAGACAAGGCTACTTCGCCGAAGACGGAGGTCTCTTGCGAGACTAC TTTGCCAAGGAACAGGACGGAGGTCTCAGACAAGGCTACTTCGCCAAAGAAAAGGACGGAGGTCTTAGACAAGACTACTTCGCCGAGGACGGAGGTCTCT TGCGAGACTACTTTGCCAAGGAACAGGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGGAAAAGGACGGAGGTCTTAGACAAGACTACTTCGCCGAGGA CGGAGGTCTCTTGCGAGACTACTTTGCCAAGGAACAGGACGGAGGTCTCAGACAAGGCTACTTCGCCAAAGAAAAGGACGGAGGTCTTAGACAAGACTAC TTCGCCGAGGACGGAGGTCTCTTGCGAGACTACTTTGCCAAGGAACAGGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGCAACAAGACGAAGGTCTCA GACAAGGTTACTTCGCTAAGGAAAAAGACGGAGGTCTCAGACAAGGCTACTTCGCCAAAGAAAAGGACGGAGGTCTTAGACAAGGCTACTTCGCCGAGGA CGGAGGTCTCTTGCGAGACTACTTTGCCAAGGAACAAGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGGAAAAGGACGGAGGTCTTAGACAAGGCTAC TTCGCCGAGGACGGAGGTCTCTTGCGAGACTACTTTGCCAAGGAACAAGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGCAACAAGACAAAGGTCTCA GACAAGGCTACTTTGCTAAGGAAAAAGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGGAAAAGGACGGAAGTCTTAGACAAGGCTACTTCGTCGAGGA CGGAGGTCTCTTGCGAGACTACTTTGCCAAGGAACAAGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGGAAAAGGACGGAAGTCTTAGACAAGGCTAC TTCGTCGAGGACGGAGGTCTCTTGCGAGACTACTTTGCCAAGGAACAAGACGGAGGTCTCAGACAAGGCTACTTCGCCAAGGAAAAGGACGGAGGTCTTA GACAAGGCTACTTCGCCGAGGACGGAGGTCTCTTGCGAGACTACTTCGCCAAGCAACAAGACGGAGGTCTCAGCCAAGGCTACTTTGCCGAGGATGAAGG CCTCTTGCGAGATTACTTCGCCAAGGAGCAGGATGAAAGTCTTTTGCGAGATCATTTCGCCAAGGAGCAAGATGGTGGGACGATAGTATCTCCACCGATG TTTGTGCTTGTCGGCAAGAATCAAGATGAAATACCCTCTAACTGA
AA sequence Show only first row Show all	>Lus10015218 pacid=23149565 polypeptide=Lus10015218 locus=Lus10015218.g ID=Lus10015218.BGIv1.0 annot-version=v1.0 MASSFAMPAAATFSSVASSPPQHSKKNMTTMLTASLKTSSKVSVSAAVVSFNKQQDGGIRRTYFAKQQDGGLRQGYFAKEKDGGLRQGYFAEDGGLLRDY FAKEQDGGLRQGYFAKEKDGGLRQDYFAEDGGLLRDYFAKEQDGGLRQGYFAKEKDGGLRQDYFAEDGGLLRDYFAKEQDGGLRQGYFAKEKDGGLRQDY FAEDGGLLRDYFAKEQDGGLRQGYFAKQQDEGLRQGYFAKEKDGGLRQGYFAKEKDGGLRQGYFAEDGGLLRDYFAKEQDGGLRQGYFAKEKDGGLRQGY FAEDGGLLRDYFAKEQDGGLRQGYFAKQQDKGLRQGYFAKEKDGGLRQGYFAKEKDGSLRQGYFVEDGGLLRDYFAKEQDGGLRQGYFAKEKDGSLRQGY FVEDGGLLRDYFAKEQDGGLRQGYFAKEKDGGLRQGYFAEDGGLLRDYFAKQQDGGLSQGYFAEDEGLLRDYFAKEQDESLLRDHFAKEQDGGTIVSPPM FVLVGKNQDEIPSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015218 [exp]	0	1
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	1.7	0.9449
AT3G61490			Pectin lyase-like superfamily ...		Lus10036383 [exp]	3.7	0.9180
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	4.5	0.9288
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	4.7	0.9402
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	4.7	0.9260
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	5.1	0.9187
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	6.0	0.9380
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	6.0	0.8730
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	7.2	0.9326
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	8.1	0.9326

Compare expression of checked genes

Lus10015218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.