Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28680 541 / 0 RmlC-like cupins superfamily protein (.1) AT1G07750 541 / 0 RmlC-like cupins superfamily protein (.1) AT1G03890 112 / 2e-27 RmlC-like cupins superfamily protein (.1) AT1G03880 111 / 5e-27 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT5G44120 98 / 3e-22 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT4G28520 75 / 1e-14 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005438 [exp] 686 / 0 AT1G07750 569 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10040867 [exp] 538 / 0 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005880 [exp] 534 / 0 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10011816 [exp] 127 / 7e-33 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 119 / 1e-29 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 117 / 7e-29 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 115 / 3e-28 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 115 / 3e-28 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 112 / 2e-27 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047200 [exp] 571 / 0 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 568 / 0 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G402600 [exp] 305 / 8e-102 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1) Potri.005G224700 [exp] 124 / 1e-31 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 124 / 2e-31 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 123 / 3e-31 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 123 / 4e-31 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 122 / 6e-31 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 120 / 2e-30 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 109 / 2e-26 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015219 pacid=23178746 polypeptide=Lus10015219 locus=Lus10015219.g ID=Lus10015219.BGIv1.0 annot-version=v1.0 ATGGATATCGATCTGACCCCAAAGCTCCCCAAGAACGTCTATGGAGGCAACGGCGGCTCCTACCACGCCTGGTGCCCCAACGATCTCGGCATGCTCCGTC AAGGCAACATCGGCGCCGCCAAGCTCGGCCTCGAGAAGAACGGCCTGGCCCTCCCTCGCTACTCCGACTCCGCTAAGGTCGCCTACATCCTTCAAGGCAA CGGCGTGGCTGGAATTGTTCTACCGGAGAAGGACGAGAAGGTGATCGCAATCCGCAAGGGAGACGCAATTGCCTTACCCTTCGGCTGCGTAACCTGGTGG TACAACAAGGAAGACACCGAGCTAGTCGTCCTCTTCTTAGGCGACACCTCAAAGGGACACGTGGCAGGTTCATTCACAGACTTCTTCCTCACAGGCTCAA ACGGAATCTTCACCGGCTTCTCCCCCGAATTCGTCTCCCGTGCATGGGACCTAGACGAGGCCGCCGTCAAGTCCATGGTATCATCTCAATCCGCCAAGGG AATCGTCAAGCTCGACGGCTCCGTCAAGCTCCCCGAACCTAAGTCGGCCAACCGCGAGGGTGTGGTGTACAACTGCGAGGAAGCACCTCTGGACGTCGAC ATCAAGAATGGCGGGAGGGTCGTTGTGCTGAACACCAAGAACCTGCCGTTGGTCGGTGAGGTTGGGTTGGGAGCTGATCTTGTGAAGCTCGACGGAAGCG CCATGTGCTCCCCTGGTTTCTCTGTTGACTCTGCCTTGCAGGTGACTTATATTGTGAGTGGAAGCGGCAGGGTTCAGGTTGTTGGTGTTGACGGGAAGAG GGTGTTGGATACCACTGTTAAGGCTGGCCAGTTGTTCATCGTGCCGAGGTTCTTCGTTGTTTCGAAGATCTGTGATCCTGATGGCATGTCCTGGTTCTCC ATCATCACCACCCCTGACCCGAAGTTCAGTCACTTGGCAGGGAAGACATCGGTGTGGAAGGCACTGTCTCCGGCGGTGCTGCAGGCGGCGTTCAATGTGT CGGCGGATGCTGAGCAGAAGTTCAGGAAGACTAGGACTTCCGACGAGATTTTCTTCCCACCATCCAAATGA
AA sequence Show only first row Show all	>Lus10015219 pacid=23178746 polypeptide=Lus10015219 locus=Lus10015219.g ID=Lus10015219.BGIv1.0 annot-version=v1.0 MDIDLTPKLPKNVYGGNGGSYHAWCPNDLGMLRQGNIGAAKLGLEKNGLALPRYSDSAKVAYILQGNGVAGIVLPEKDEKVIAIRKGDAIALPFGCVTWW YNKEDTELVVLFLGDTSKGHVAGSFTDFFLTGSNGIFTGFSPEFVSRAWDLDEAAVKSMVSSQSAKGIVKLDGSVKLPEPKSANREGVVYNCEEAPLDVD IKNGGRVVVLNTKNLPLVGEVGLGADLVKLDGSAMCSPGFSVDSALQVTYIVSGSGRVQVVGVDGKRVLDTTVKAGQLFIVPRFFVVSKICDPDGMSWFS IITTPDPKFSHLAGKTSVWKALSPAVLQAAFNVSADAEQKFRKTRTSDEIFFPPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	0	1
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10003309 [exp]	14.9	0.9041
AT3G11900		ANT1	aromatic and neutral transport...		Lus10021089 [exp]	16.6	0.7942
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10005653 [exp]	17.1	0.7814
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035188 [exp]	20.4	0.8368
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	22.8	0.9010
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	24.9	0.8370
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	26.8	0.8174
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	28.8	0.8978
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	30.4	0.8920
AT4G34215			Domain of unknown function (DU...		Lus10001128 [exp]	31.7	0.8941

Compare expression of checked genes

Lus10015219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.