Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07745 251 / 2e-82 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) AT3G22880 62 / 1e-10 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT2G28560 60 / 3e-10 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT5G57450 57 / 4e-09 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT5G20850 50 / 5e-07 ATRAD51 RAS associated with diabetes protein 51 (.1) AT1G79050 41 / 0.0006 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005437 [exp] 397 / 2e-138 AT1G07745 231 / 1e-73 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10037642 [exp] 145 / 1e-43 AT1G07745 108 / 1e-29 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10025465 [exp] 110 / 3e-30 AT1G07745 56 / 4e-10 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10038467 [exp] 62 / 2e-10 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10023341 [exp] 61 / 5e-10 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10006625 [exp] 54 / 5e-08 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10039383 [exp] 52 / 2e-07 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081500 [exp] 60 / 5e-10 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.006G135200 [exp] 53 / 1e-07 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.018G093100 [exp] 52 / 1e-07 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10015220 pacid=23178783 polypeptide=Lus10015220 locus=Lus10015220.g ID=Lus10015220.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTGGAATCTCTGGAAGGGCAGCATCATCAACCATGGTTAGACGGCGTTGAGCTTCTGCGAGATGCAACCGTTAACAAACGGCTTCTTTCAT CTGGACTCGCTGGGTTGGATTCGTTTCTTCACGGTGGATTGCGGGTTGGTCAATTGACCGAGTTGGTTGGCCAATCGTCGTCTGGCAAAACCCAATTCTG TCTAAGGTTTGCTGCAAGCGTTGCCAAGATAAACAGGAACAGCAGTGTTATGTATGTAGATACAGGAAACTCCTTTTCGAGCAGAAGAATCGAGCAATTT GTTCGCGAGGAAAGAATAGCCATTGTTCAAAGTGCAATGAGCAGAATACTGTGTCACTCCATTTTCGACATCTTTTCGCTGTTCGATACACTACACCAGT TCGAGTTCAAGTTGAGATCGATCCAGGAAAGCAGTGAAGAAGAAGCCTGTGTGGCGACTCGGTTACTCATCATCGATTCCATCTCGTCGCTGATCACCCC TGTACTCGGAGGAAGCAGCTCGCAAGGGCATGCTTTGATGACGTCGCTAGGTTTCTTGCTGAAGAAGCTAGCACATGAGCACAACATTGCAGTTCTGGTG ACGAATCATATGGTGGGCGGAGAAGGCGGGAGTCTGAAACCGGCTTTGGGAGAGAGTTGGAAGAGTATTCCACATGTGAGGCTGCTGATCTCTCGTAGCC ATGGAAGCAATGCTTGCTGCAAAGTTTCCACTCTGAAACACCCTTCACTGAATGAGACAATAGCAGGCCGATTTGAAGAACGATCTGGGTTGGGATGCAT CGGGAGGAGGCTCCGAGCTCTCGGGGAAAAGAGTGCTAGTGAGGGGATGAATGTGTGGGAGGGTGGAGTTATTATAGGCAAACGAGAAATAGAGAAGTAC CGGGGATGCACCTAA
AA sequence Show only first row Show all	>Lus10015220 pacid=23178783 polypeptide=Lus10015220 locus=Lus10015220.g ID=Lus10015220.BGIv1.0 annot-version=v1.0 MAAVESLEGQHHQPWLDGVELLRDATVNKRLLSSGLAGLDSFLHGGLRVGQLTELVGQSSSGKTQFCLRFAASVAKINRNSSVMYVDTGNSFSSRRIEQF VREERIAIVQSAMSRILCHSIFDIFSLFDTLHQFEFKLRSIQESSEEEACVATRLLIIDSISSLITPVLGGSSSQGHALMTSLGFLLKKLAHEHNIAVLV TNHMVGGEGGSLKPALGESWKSIPHVRLLISRSHGSNACCKVSTLKHPSLNETIAGRFEERSGLGCIGRRLRALGEKSASEGMNVWEGGVIIGKREIEKY RGCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	0	1
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	1.0	0.9375
AT2G30270			Protein of unknown function (D...		Lus10042235 [exp]	4.2	0.9165
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	6.9	0.9130
AT4G27120			unknown protein		Lus10011161 [exp]	7.1	0.9249
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	7.3	0.9269
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	8.8	0.9111
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	8.9	0.9183
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	11.0	0.9125
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	11.1	0.9211
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	11.5	0.9110

Compare expression of checked genes

Lus10015220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.