Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39380 478 / 2e-161 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G55150 461 / 4e-155 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G28640 445 / 4e-149 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT3G09520 443 / 3e-148 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G59730 422 / 5e-140 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT1G07725 407 / 3e-134 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT3G09530 356 / 3e-114 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28650 345 / 1e-110 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT1G72470 300 / 4e-93 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 298 / 2e-92 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005436 [exp] 1006 / 0 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040872 [exp] 728 / 0 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 724 / 0 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10025291 [exp] 459 / 6e-154 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040329 [exp] 449 / 1e-150 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10024438 [exp] 425 / 7e-141 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10023450 [exp] 397 / 1e-130 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 366 / 3e-118 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 365 / 1e-117 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234600 [exp] 556 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 548 / 0 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.010G212400 [exp] 497 / 4e-169 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.006G214300 [exp] 496 / 6e-169 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.008G048700 [exp] 442 / 9e-148 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G166400 [exp] 311 / 6e-97 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 307 / 1e-95 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 299 / 2e-92 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 294 / 1e-90 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 266 / 4e-80 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10015221 pacid=23178708 polypeptide=Lus10015221 locus=Lus10015221.g ID=Lus10015221.BGIv1.0 annot-version=v1.0 ATGAGATCGCATTTCTTCAAATCGCCGTCGCCGTCTCCGCTCCACTCGCCGGCAGCATCCCCGCCACGCCGCCACCACCCCTTCTCCGAGACTATGATCG AAGAAAACATTGACAACGCCGAGTCGCTCATCTCCAGTTGGGACGAGCCTACTGCTTCATCATCCTCTGTCACGACTTCTCTGTTCTCTCATGATCGAAA TGAGGCCAAGAGGTACATAGCCGCCGTTAAGGATCTTCAGGCAGCTATGCAATATTACGTCTCGAGGAATATTCCGGCGTCGGAGAATCTTGTTCGAGCT CAGAGCTTGATGCAGAAGGCGATGAAGAGACTCGAGAAGGAGTTTTACTTGATTCTCAGGTCGAATCGGGAGCAGCTTGATGCTGAATTGGTCTCCGTTC GTGGTGGATCAGTTGTTGTTGATGGCTCTAGATCATCGGATCGGTCGTATGATCGGGCGTTGACGCTTTCGGATCTCGGTGATGGCGAGGTAACCGACGG AGATGGAGATGAGACTGTGTCGGCGGAGATATCTGAGGTGGAGGAAGAGGCGATGGTTGCTATATCTGATTTGAAAGCGATTGCTGACTGTATGATTGGA GCTGGATATACAAAGGAGTGCGTTAAGATTTACCAAATCATTCGGAAATCGATCGTCGACGAAGGCCTGTACCGCCTGGGAGTCGACAGATTTAGCTTGT TGCAGGTCCATAAGCTCGATTCGGATGTGGTGGAGTCGAAGATCAAGACGTGGCTGTACGCCGTGAAGGTCGCCGTGAAGACTCTGTTCAATGGAGAGAG GCTGCTCTGTGACCACGTTTTCTCGTCCTCTGCGGCGATCAGGGAGTCCTGCTTCGTTGAGATCGTTCGAGAAGGTGCTCTCGACATGTTTGGATTCCCG GAAAACATCGCCAGGGGGAAGAAAACTCTCGAGAAAATGTTCCTCACTCTCGACATTTACGAGGCGATCTCGGATCTATGGCCGGATATCGAATCAATTT TTGAATTCGAATCGACTTCTTCGGTCAGAAATCGAGCGGTGAATTCTCTAATCAAACTCGGGGAGGCAGTGAGGACGATGCTATCTGATCTGGAAATGTC GATTACGAAGGATAGCTCGAAGTTGTCTGTTCCGGGAGGCGGAGTTCATCCTCTTACTCGCTATGTGATGAACTACATCTCTTTACTCAGCGACTACTCT GGCGTACTCTCGGATATAGTAGCGGATTATCCTTTGGAGTTTACGTCACCTTTACCGGAGACTTACTTCCACAGTCCTACCACCGACGACGATGGCAGGA CGTCTCCAATTTCTGTTCGATTTGCGTGGCTGATCCTCGTCCTCCTCTGTAAAATCGATATCAAGTCTCAATCATACAAGGACGTCGCGCTCTGCTACTT ATTCTTAGCGAACAATCTCAACTATGTTGTGAACAAGGTCCAATCCTCGAGCTTGAAATTCCACCTCGGCGAAGAATGGATCGAGAAGCACGAATCCAAG GTGAAGCAGTACGCAACCAACTACGAGCGTGTGGGGTGGGACAAAGTGATCTCGTCGCTTAAGGCCACCACGGAGGCGATGACGGTTCACGAAGCTGCGG AGTGTTTCAGGAATTTCAACACGGCGTTCGAGGAGACGTACAAGAAGCAGTCGGCTTGGGTGGTGCCGCACTCGAGGCTCAGAGACGATATCAAGATATC AGTGGCGAGGAAGATTGGACCGTCGTACCGGAGTTTGTACGAGAGGTACAGGACAACAGTGGTTAGAGAGTTCGGGAGGGATGGAAGTGTCAGATATGCC CCAGACGATTTGAACAACTACTTGTCGGATTTGTTCTATGGAGTATCGTCAGGGAGTGACGTCGGGAGTAGCGTTTCGTCTAGCTCTTCAAGCCGGTCAT CAATCTCTTCTGGGGGCCGTGGCCGAGGGTCCGGTCGATAA
AA sequence Show only first row Show all	>Lus10015221 pacid=23178708 polypeptide=Lus10015221 locus=Lus10015221.g ID=Lus10015221.BGIv1.0 annot-version=v1.0 MRSHFFKSPSPSPLHSPAASPPRRHHPFSETMIEENIDNAESLISSWDEPTASSSSVTTSLFSHDRNEAKRYIAAVKDLQAAMQYYVSRNIPASENLVRA QSLMQKAMKRLEKEFYLILRSNREQLDAELVSVRGGSVVVDGSRSSDRSYDRALTLSDLGDGEVTDGDGDETVSAEISEVEEEAMVAISDLKAIADCMIG AGYTKECVKIYQIIRKSIVDEGLYRLGVDRFSLLQVHKLDSDVVESKIKTWLYAVKVAVKTLFNGERLLCDHVFSSSAAIRESCFVEIVREGALDMFGFP ENIARGKKTLEKMFLTLDIYEAISDLWPDIESIFEFESTSSVRNRAVNSLIKLGEAVRTMLSDLEMSITKDSSKLSVPGGGVHPLTRYVMNYISLLSDYS GVLSDIVADYPLEFTSPLPETYFHSPTTDDDGRTSPISVRFAWLILVLLCKIDIKSQSYKDVALCYLFLANNLNYVVNKVQSSSLKFHLGEEWIEKHESK VKQYATNYERVGWDKVISSLKATTEAMTVHEAAECFRNFNTAFEETYKKQSAWVVPHSRLRDDIKISVARKIGPSYRSLYERYRTTVVREFGRDGSVRYA PDDLNNYLSDLFYGVSSGSDVGSSVSSSSSSRSSISSGGRGRGSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10015221 [exp]	0	1
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10024428 [exp]	1.0	0.9846
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	4.2	0.9679
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	5.3	0.9689
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	6.3	0.9755
					Lus10005525 [exp]	6.3	0.9722
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	7.5	0.9724
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	8.9	0.9711
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	9.9	0.9646
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	10.5	0.9594
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	12.2	0.9548

Compare expression of checked genes

Lus10015221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.