Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28630 647 / 0 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 620 / 0 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT5G04530 504 / 7e-177 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G01120 346 / 6e-114 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G25450 340 / 6e-112 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G46720 333 / 1e-109 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G68530 332 / 8e-109 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G26640 330 / 9e-108 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT4G34510 322 / 7e-105 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G16280 322 / 8e-105 KCS9 3-ketoacyl-CoA synthase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005434 [exp] 912 / 0 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10004918 [exp] 595 / 0 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040873 [exp] 592 / 0 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040333 [exp] 504 / 2e-176 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 494 / 2e-172 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 442 / 4e-152 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 442 / 1e-150 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 413 / 2e-140 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 419 / 2e-139 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026800 [exp] 700 / 0 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 686 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G212600 [exp] 519 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 501 / 3e-175 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 478 / 2e-166 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 460 / 1e-159 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 418 / 2e-143 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 345 / 2e-113 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 339 / 3e-111 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.010G125300 [exp] 336 / 2e-110 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10015222 pacid=23178709 polypeptide=Lus10015222 locus=Lus10015222.g ID=Lus10015222.BGIv1.0 annot-version=v1.0 ATGGATGATGCCATAACAATGGTGATCTATGGCTTCCTAATCCTCTACCCACTCATCACCCTATGGAAATGGTTCGACCGGAAACTCAACCAGGAATGCT ACATCCTTGACTACGAGTGCTATAAGCCCTCCTCCGACCGGAAACTCGACACTGAGTTCTCCGGTCAGATCATCAAGCGCAACCCCAACTTGGGCCTCGA AGAGTACAAGTTCCTCCTCCGAGCCATCGTCAGCTCTGGCATCGGCGAGGAGACCTACGGCCCTAAGGTCGTGTTCGAGGGCCGCGAGGAGAGTCCGTCT TTACAAGACGGACTCTATGAACAGGACGAATTCTTCCACGACACAATCGACAGACTCCTGACTCGCTCGAGGATCTCCCCGAGCGAGATAGACATACTGG TCGTGAACGTCTCGATGATCACCTCACAACCCTCTTTGTGCTCGCGAATCATCAACCACTACGAGATGAGGGAAGACGTCAAGTCTTTTAACCTCACCGG AATGGGATGCTCCGCGAGCTTGATTTCCACCGGTATTGTGTCGAACACCTTGCGTGCGTACCCAAACAAAATCGCGCTGGTCGTCACTTCCGAATCTCTC TCCCCGAATTGGTACTCCGGGAACGACAAATCGATGATCTTAGCCAATTGCCTGTTCCGATCCGGTGGTGCAGCGATCTTGATGACGAACAAACGCTCGT TAAAACAGAGAGCTCTGTTCAAGCTCAAAACTCTGGTTCGCACTCACCATGGCGCCAAGGACGAATCGTACGGATGCTGTACTCAGAAGGAAGACGATCA TGGCCGTCCAGGATTCTACTTGTCCAAATCGCTCCCTAAGGTCGCGACAAAAGCCTTCGTCGCGAATTTAAGGGAGATTTCTACTAAGATCCTTCCGGTT AGGGAGCTTCTAAGGTTTGTGATTCTCTATTCTATCAGGAAACTGACTACGGCGTCGAAGAATCGAAAATCAGCGGCGGCGGCGGCCCCGGTGATAAATT TCAAAACAGGGGTGGAGCATTTCTGCATACATACCGGAGGAAAAGCGGTGATCGACGGTATAGGGAAGAGTTTGGAGCTGAGCGAGTACGATTTGGAGCC GGCGAGGATGACGTTGCACCGGTGGGGGAACACGTCGGCGAGCAGCTTGTGGTATGTGCTGGCCTACATGGCGGCGAAGCGGCGGTTGAAGAGAGGGGAT CGGGTCCTGATGATTAGTTTCGGGGCAGGGTTCAAGTGTAACAGCTGTTTGTGGGAGGTGGTCAGGGATTTGGGACCCGGTGGATCCGACGGTGGAAGAG GAGGGATCGGAGGTCCGACGGTATGGGACGATTGCATTGAAAGCTACCCGCCAGAGACGTTGGCCAACCCATTCATGGCGAAGTACGGATGGCTTGCAAA CGAGGATCCCGCCACTTTTGTTATGCCCGATTCACTTTCACTGCGTCCGGGTAAAAAAAATGACGATTCACCACAGTAA
AA sequence Show only first row Show all	>Lus10015222 pacid=23178709 polypeptide=Lus10015222 locus=Lus10015222.g ID=Lus10015222.BGIv1.0 annot-version=v1.0 MDDAITMVIYGFLILYPLITLWKWFDRKLNQECYILDYECYKPSSDRKLDTEFSGQIIKRNPNLGLEEYKFLLRAIVSSGIGEETYGPKVVFEGREESPS LQDGLYEQDEFFHDTIDRLLTRSRISPSEIDILVVNVSMITSQPSLCSRIINHYEMREDVKSFNLTGMGCSASLISTGIVSNTLRAYPNKIALVVTSESL SPNWYSGNDKSMILANCLFRSGGAAILMTNKRSLKQRALFKLKTLVRTHHGAKDESYGCCTQKEDDHGRPGFYLSKSLPKVATKAFVANLREISTKILPV RELLRFVILYSIRKLTTASKNRKSAAAAAPVINFKTGVEHFCIHTGGKAVIDGIGKSLELSEYDLEPARMTLHRWGNTSASSLWYVLAYMAAKRRLKRGD RVLMISFGAGFKCNSCLWEVVRDLGPGGSDGGRGGIGGPTVWDDCIESYPPETLANPFMAKYGWLANEDPATFVMPDSLSLRPGKKNDDSPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10015222 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10040679 [exp]	3.9	0.6583
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	18.8	0.5993
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007959 [exp]	22.1	0.5767
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	100.6	0.5220
					Lus10007072 [exp]	106.7	0.5192
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10001666 [exp]	163.7	0.4975
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	194.5	0.4685
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	197.1	0.4780
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	208.9	0.4704
					Lus10037474 [exp]	216.9	0.4583

Compare expression of checked genes

Lus10015222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.