Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46200 340 / 4e-117 ATNUDT9 nudix hydrolase homolog 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005433 [exp] 566 / 0 AT3G46200 363 / 1e-126 nudix hydrolase homolog 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026700 [exp] 379 / 3e-132 AT3G46200 411 / 2e-145 nudix hydrolase homolog 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10015223 pacid=23178810 polypeptide=Lus10015223 locus=Lus10015223.g ID=Lus10015223.BGIv1.0 annot-version=v1.0 ATGGAGCCACCACCGGAATACAAGCTTCTCCTCTCTTGCCCTTCTGGGCTCTTGCCGTCTCAGGTTCTTCCTTCCTTCCTATTATTCTGCAACCCATTTT GCTCTCAGTCGAAATACGTTTCTGATTTGGCTGCTGGATCCAAAAAGCTGTCCGTGGTTTTCGATCGATCGTACGACAGAGTCGCGCTTCCCAACAGTGA ATTGGAGGATTCCGTTGCTCAGATATGGGAGGAAAGAGTTCAGAGAAACTCATCATTATACAACGGGAAGAAATTTCGGTATGGAGGATTTAGTCTTCCG GATGGTGGTGCAGCTGGTGGTGGCGTTTCTCATGCTTGCCTCCACCTCGGATTGACAGATTATCGGACCTTTATTGGGACGAACTTAAATCCTTTGTGGG AAAATTTCCTTGCACCATCTGAAGTGTTTCTCACTGTAGATGATGTTATACTATGTCAACACACGGCGAGTCCACTCGGGAACGGCGCGATCGTAGTAAC CTCCGATAATGAAATCGTTGTGTTGAGAAGAAGTGAAAATGTTGGAGAGTTCCCTGGTTACTTTGTTTTTCCCGGAGGTCATCCCGAGCCTGGGCAAATC GAAGCCACATCTGCTGCAGACGTTATAAGAAATGAGGATTTGAACAAGAAGGTTTCCGAGGAGATGTTCGACAGTATTTCTCGTGAAGTAGTTGAAGAAA TCGGAGTTCCTGCAACATCTCTCTCAAGTCCGGTTTTTATAGGTCTCTCGCGCAGGATCCTCAACGTAAGACCAGCTGCATTTTTCTTCATGAAATGCAG CCTGCCATCCAAGGAAATCCATCAACTCTACTCCTACGCACTAGACGGCTTCGAGTCTATACAACTTCACACCGTCTCATTGATGGTGTTAGAACACATG AAAGATAAAATGCCAGGCTGTCACCAAGGCGGATTCGAGCTTTACAAGCTGATGTTGGACGCTTCATGTAATGCACAGCCTGATGCTGCAAATCCTCAGC AGCATTGA
AA sequence Show only first row Show all	>Lus10015223 pacid=23178810 polypeptide=Lus10015223 locus=Lus10015223.g ID=Lus10015223.BGIv1.0 annot-version=v1.0 MEPPPEYKLLLSCPSGLLPSQVLPSFLLFCNPFCSQSKYVSDLAAGSKKLSVVFDRSYDRVALPNSELEDSVAQIWEERVQRNSSLYNGKKFRYGGFSLP DGGAAGGGVSHACLHLGLTDYRTFIGTNLNPLWENFLAPSEVFLTVDDVILCQHTASPLGNGAIVVTSDNEIVVLRRSENVGEFPGYFVFPGGHPEPGQI EATSAADVIRNEDLNKKVSEEMFDSISREVVEEIGVPATSLSSPVFIGLSRRILNVRPAAFFFMKCSLPSKEIHQLYSYALDGFESIQLHTVSLMVLEHM KDKMPGCHQGGFELYKLMLDASCNAQPDAANPQQH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10015223 [exp]	0	1
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10029985 [exp]	3.0	0.8955
AT2G34250			SecY protein transport family ...		Lus10010932 [exp]	6.8	0.8902
AT4G17650			Polyketide cyclase / dehydrase...		Lus10009758 [exp]	11.4	0.8541
AT1G74270			Ribosomal protein L35Ae family...		Lus10027754 [exp]	22.1	0.8629
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	30.5	0.8589
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	31.6	0.8587
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	35.3	0.8567
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	37.1	0.8378
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	49.4	0.8461
AT2G18110			Translation elongation factor...		Lus10037618 [exp]	54.2	0.8461

Compare expression of checked genes

Lus10015223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.