Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 662 / 0 Ankyrin repeat family protein (.1) AT5G60070 655 / 0 ankyrin repeat family protein (.1) AT5G02620 548 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 542 / 0 Ankyrin repeat family protein (.1) AT1G05640 524 / 0 Ankyrin repeat family protein (.1) AT3G12360 367 / 2e-120 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 348 / 8e-114 Ankyrin repeat family protein (.1) AT3G09550 350 / 2e-113 Ankyrin repeat family protein (.1) AT1G34050 111 / 9e-26 Ankyrin repeat family protein (.1) AT2G24600 105 / 1e-23 Ankyrin repeat family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005432 [exp] 1013 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 564 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 556 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 528 / 0 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 409 / 5e-139 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 364 / 4e-119 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10025287 [exp] 347 / 4e-116 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10034579 [exp] 353 / 1e-115 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 353 / 4e-115 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099600 [exp] 762 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 739 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 683 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 628 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 612 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 503 / 4e-173 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 493 / 2e-168 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 370 / 2e-122 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 360 / 2e-118 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 355 / 6e-116 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10015224 pacid=23178795 polypeptide=Lus10015224 locus=Lus10015224.g ID=Lus10015224.BGIv1.0 annot-version=v1.0 ATGGACGAGACGCCGACGAGCTCGTCGCCGGCGATGCAGCACACGCCGGCGCCGAGGAAGAAGATAGCGAAGCAGCTGACGGGGAAGAAGGGGGACACAT CGCTGCATTCGGCGGCGAGGAGCGGGAACATGGAGGCGGTGGTGGAGATCCTCGCCGGAATGTCCGACGAGGAGGAGGAGCTGAGGGTGACGTTGGAGAA GCAGAACCAGTCCGGCGAGACGCCGTTGTATGTTGCGGCGGAGTACGGATATGTTGACCTTGTGAGGGAGATGATCAAGTATTGTGACCTCGCCGACGCC GGAATCAAGGCCAAGAATGGGTTCGACGCCTTCCACATTGCCGCCAAACAAGCCGATATCGATGTTTTAAGGGTGTTAATGGAGGCATATCCAGAGCTAG CAATGACAGTGGATCTATCAAACACAACGGCATTACACACAGCAGCAATGCAAGGTCACATACAGATCGTCAACTTTCTGCTCGAAGCCGCCGGGAGCAG CCTGGCCACCATTGCCCGGAGCAACGGCAAAACCGCATTGCATTCCGCAGCCAGGAACGGGCATGCGGAGGTCACCCGGGCGCTGGTGACGGCGGAGCCA GGGATCGCGACTCGGACCGACAAAAAGGGCCAGACCGCGCTTCACATGGCGGTTAAAGGACAGAAGATCGACGTCGTTGAGGAGCTGATCAGGGCGTCGC CGGAGACTTTGAACTTGTTGGATAATAAAGGGAACACCCCGTTGCATATCGCTAGCCGGAAAGGCAGAGCTCAGATTGTGAAGCTACTGCTCCAACACAA GGCAACAGACATCAAGGCCGTGAACCGGACCTCCGAAACCGCACTCGACACGGCCGAGAAAATGGGCCAGCCCGAAGTCAAAGCCATCCTCCAAGAATTC GGAGTACAGAGCGCCCAAGCCCTAAACGCTAAACCCCTCAACCCAGCCAAAGAGCTCAAACAGACCGTAAGCGACATCAAACACGAAGTCCACTACCAAT TGGAACACACCCGCCAGACCCGCCGCCGGGTCCAGGGGATCGCCAAACGCCTCAACAAAATGCACGCCGAGGGCCTGAATAACGCGATCAACTCGACCAC TGTGGTGGCCGTACTGATCGCGACAGTGGCCTTCGCCGCGATCTTCACCGTCCCAGGCCAGTACGCAGACGACCCGGAACAAATCCGCCCAGGCCAAACC CTGGGCGAGGCGAACATCGCCCAGGGCGGAGCCCCCTTCATCGTCTTTTTTCTCTTCGATTCCGTAGCACTGTTCATCTCGCTGGCAGTAGTGGTGGTCC AGACTTCGGTGGTGGTTATCGAGAGCAAGGCGAAGAAACAGATGATGGCGGTGATCAACAAGCTGATGTGGATCGCCTGCGTTCTGATCTCGGTGGCATT CCTCGCGCTTTCGTTCGTGGTCGTCGGCGAGAAGGAGAAGTGGCTGGCGATTAGTGTGACGATTATTGGTACGCTAATAATGGTTACGACTTTGGGGACA ATGTGTTACTGGGTGATACGACATCGGATTGAAGCTTCCAAACTGAGGAGTAGTTTACGGAGGAATTCGCTTGGGAGTCGGTCTAGATCGTTCACTGCAT CGGCGATTTCTGATTCCGAGATTCTTACCAACGAGTACAAAAAAATGTACGCCATATAG
AA sequence Show only first row Show all	>Lus10015224 pacid=23178795 polypeptide=Lus10015224 locus=Lus10015224.g ID=Lus10015224.BGIv1.0 annot-version=v1.0 MDETPTSSSPAMQHTPAPRKKIAKQLTGKKGDTSLHSAARSGNMEAVVEILAGMSDEEEELRVTLEKQNQSGETPLYVAAEYGYVDLVREMIKYCDLADA GIKAKNGFDAFHIAAKQADIDVLRVLMEAYPELAMTVDLSNTTALHTAAMQGHIQIVNFLLEAAGSSLATIARSNGKTALHSAARNGHAEVTRALVTAEP GIATRTDKKGQTALHMAVKGQKIDVVEELIRASPETLNLLDNKGNTPLHIASRKGRAQIVKLLLQHKATDIKAVNRTSETALDTAEKMGQPEVKAILQEF GVQSAQALNAKPLNPAKELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYADDPEQIRPGQT LGEANIAQGGAPFIVFFLFDSVALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWIACVLISVAFLALSFVVVGEKEKWLAISVTIIGTLIMVTTLGT MCYWVIRHRIEASKLRSSLRRNSLGSRSRSFTASAISDSEILTNEYKKMYAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	1.4	0.8400
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	2.8	0.7828
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10004187 [exp]	3.2	0.7642
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	3.5	0.8203
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	4.0	0.8261
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	4.2	0.7894
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	5.3	0.7858
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Lus10041968 [exp]	5.7	0.7976
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	6.5	0.7388
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	11.2	0.7765

Compare expression of checked genes

Lus10015224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.