Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 989 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 570 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 563 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 559 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 550 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 549 / 0 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 538 / 9e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 527 / 3e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 517 / 6e-173 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 513 / 4e-170 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 595 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 566 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 561 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 558 / 0 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 558 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 556 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 550 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 547 / 0 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 545 / 2e-180 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 1084 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 580 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 575 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 565 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 559 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 553 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 551 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 538 / 9e-179 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 535 / 2e-177 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 532 / 6e-177 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015225 pacid=23178784 polypeptide=Lus10015225 locus=Lus10015225.g ID=Lus10015225.BGIv1.0 annot-version=v1.0 ATGGCGGCAATCGCATCACTCAACTTCTTAGCATCTCCATGGCGAAACTTCCACGGCCATTACCGCATCAAACCAGGAAATTCATTCATTATCCACAATC GAGCTGCAGAATCCACTCCATCATCATCACCGTCAACAACTCTATCCTGCTCCTACTCAACAATTCCAACACCAGAATTGATTACTAAACCCAAACACCA CGAATTTACGGACTTCAACGCCAAGGTAAGGGAATTTTGTGAAGTGGGTGACCTGGAGGAAGCCATGGGATGGTTTCGGAAGTCTGAGAAAGCTGACATT TCGTCCAACACTTACTGCACATTGTTGCAGCTCTGTGCAGAGCTCAAGTGGTTACTATACGGTAAAGAGATTCATTCCGTCATCCGATCTCGTGGCATTC CGATCGAAGGTCTTTTAGGGACGAGGCTTGTGTTCATGTACGTGAGCTGCGGGGAATTACGACAGGGCAGATTGGTGTTCGACGAGGTTGCAAACGATAA GGTTTTTCTCTGGAATCTGATGTTGAACGAGTACGCTAAGCTTGAAGAATTTGCAGAGTGTTCGTATCTGTTTAGGAAGATGTTGGATGAAGGGATTGCA GCGGATTCGTATACTTTCTCTTGCATTTTGAAGTGCTTTGCAGCTTTAGGGAGTGTGAATCACGGTGAATGGCTTCATGGCTATTTGATAAAGTTCGGGT TCGATTTCGGTAGCTGCAGTGTAGCTAATTCCTTGATGTCGTTCTACTTTAAGGTGAGGAAGGTTGAGAGTGCACGCAAGGTGTTCGACGAAATGCCTCA GAGAGATGTCATCTCCTGGAATTCCATGATGAGTGGGTACGTTGAGAATGGTAACTCTGAAGAAGCACTTGAGATTTTCTGGATGATGATATCTTCTGGA GTTGAAATCGATTTGGCCTCAGCTGTTATTGTTCTTTCGGCCTGTGCGAATTCGGTTCGTGTTTCGTTGGGGAGAGCAGTTCATGGTTTGGGGATCAAGC TCAATTTCGACAGCGAAACCAAGTTCCAGAACGTGTTGCTAGACATGTATTCCAAATGCGGGGAATTGGATTCCACGAGGATCGTCTTCGAAAAGACCGA CGAAAAGTGTGTTGTATCGTGGACCGCGATGATTCAAGCCTATGCCCGAGCCGGAATCCATGATCTCGCGATCCGGTTGTTCGAGGAAATGAAGACAGTT GGTGCTAGGCCGGATATATTCACTCTGTCAGTGGTTCTTCATGCTTGTGCCTGTTCCGGATCGTTGGACTCCGGCAGAAACGTGCATAGCTACATCATTG AACACGGACTCGAATCAGACTTGTTCGTACGTAACTCCCTCATGGACATGTATGCGAAATGCAGGAGCATGGAAGACGCCAGTTCGTTGTTTTCGAAGAT GCCAGTAAAGGACATCATAGCTTGGAACACGATCATAGGAGGATACTCGAAGAATGATCTCCCTCGTGAAGCCATTCACAAGTTTGTGACAATGGTACGA GGCGATTTACAATTACCCGATGGTAGAACTATGTCTTGTGTTCTTCCAGCTTATGCCAGCCTGGCTGCTTTCGACAAGGGAAGAGAGATCCACAGCCACA TACTGCGAAAAGGGTACATAACCGATCGACATGTCGCAAATGCACTTGTCGATATGTATGTAAAATGTGGAGCGCTTGCTATTGCTGAGAGGATCTTCGC CGCAATTCCTTCGAAGGATCTTGTTTCGTGGACAGTGATGATCGCTGGCTATGGAATGCACGGAATGGGGAAGGAAGCTGTGGAAGCCTTTCGACAGATG AGGCAAGAAGGTACCGAACCGGACCATGTTTCGTTCATATCGGTCTTGTACGCTTGCAGCCATTCCGGATTAGTCGACGAAGGATGGAGATTCTTCAACA TAATGCAGAACGAATGCAACATCGAGCCGAATTTGGAACACTACGCGTGCATAGTCGATCTCCTCTCTCGCCAAGGGAAGCTACAGATGGCATACAAGTT CATCAAGGCAATGCCAATGGACCCCGACGCCACAATCTGGGGATCGTTGCTCTGCGGATGTCGAATCCACCACGATGTCAAACTAGCAGAAGAAGTCGCG GAACGAGTTTTCGAACTCGAACCGGAGAACGCAGGATACTACGTTCTGTTATCAAACATCTACGCCGAGGCAGAGATGTGGGGGGAAGCGAGGCGAATGA GGGAAAAAATCGGCCGACGAGGCCTGAAGAAACATCCAGGTTGCAGCTGGATAGCTGATCCAAATGGGAAGAAAGTTCATGTCTTCGTTGCAGGAGACTG TTCGCACCCGGAAACCAACCTAATCGAGTCATTGCTCGAAGAGGTTCGGTCGAGGATGAAGAAAGGAGGCTATACACCAAGGTTGAGATATGCACTGAGG AATGGAGATGATGCTGGGAAGGAAATGGCTCTCTGTGGACACAGTGAGAAGTTAGCTATGGCTTATGGATTGTTGAAGTTGCCACCTGGGAAAACAGTGA TCAGAGTGTTCAAGAACTTGAGAGTTTGCCGCGACTGTCATGAAACGGCCAAGTTCATCTCCAAATTCTACGGGAAGGAAATTATACTGAGGGATTCTAA TTTCTTTCACCATTTTAAGGATGGAAGTTGTTCTTGCAGAGGGTTTTGGTAA
AA sequence Show only first row Show all	>Lus10015225 pacid=23178784 polypeptide=Lus10015225 locus=Lus10015225.g ID=Lus10015225.BGIv1.0 annot-version=v1.0 MAAIASLNFLASPWRNFHGHYRIKPGNSFIIHNRAAESTPSSSPSTTLSCSYSTIPTPELITKPKHHEFTDFNAKVREFCEVGDLEEAMGWFRKSEKADI SSNTYCTLLQLCAELKWLLYGKEIHSVIRSRGIPIEGLLGTRLVFMYVSCGELRQGRLVFDEVANDKVFLWNLMLNEYAKLEEFAECSYLFRKMLDEGIA ADSYTFSCILKCFAALGSVNHGEWLHGYLIKFGFDFGSCSVANSLMSFYFKVRKVESARKVFDEMPQRDVISWNSMMSGYVENGNSEEALEIFWMMISSG VEIDLASAVIVLSACANSVRVSLGRAVHGLGIKLNFDSETKFQNVLLDMYSKCGELDSTRIVFEKTDEKCVVSWTAMIQAYARAGIHDLAIRLFEEMKTV GARPDIFTLSVVLHACACSGSLDSGRNVHSYIIEHGLESDLFVRNSLMDMYAKCRSMEDASSLFSKMPVKDIIAWNTIIGGYSKNDLPREAIHKFVTMVR GDLQLPDGRTMSCVLPAYASLAAFDKGREIHSHILRKGYITDRHVANALVDMYVKCGALAIAERIFAAIPSKDLVSWTVMIAGYGMHGMGKEAVEAFRQM RQEGTEPDHVSFISVLYACSHSGLVDEGWRFFNIMQNECNIEPNLEHYACIVDLLSRQGKLQMAYKFIKAMPMDPDATIWGSLLCGCRIHHDVKLAEEVA ERVFELEPENAGYYVLLSNIYAEAEMWGEARRMREKIGRRGLKKHPGCSWIADPNGKKVHVFVAGDCSHPETNLIESLLEEVRSRMKKGGYTPRLRYALR NGDDAGKEMALCGHSEKLAMAYGLLKLPPGKTVIRVFKNLRVCRDCHETAKFISKFYGKEIILRDSNFFHHFKDGSCSCRGFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	0	1
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	1.0	0.9010
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	4.7	0.8531
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	5.5	0.8339
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	6.5	0.8583
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	7.7	0.8679
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	9.1	0.8810
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	9.5	0.8651
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006175 [exp]	9.8	0.8444
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015183 [exp]	16.7	0.8200
AT5G01590			unknown protein		Lus10012500 [exp]	16.9	0.8683

Compare expression of checked genes

Lus10015225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.