Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18760 318 / 7e-105 AtRLP51 receptor like protein 51 (.1) AT5G45770 272 / 4e-87 AtRLP55 receptor like protein 55 (.1) AT4G36180 92 / 2e-19 Leucine-rich receptor-like protein kinase family protein (.1) AT5G23400 89 / 1e-18 Leucine-rich repeat (LRR) family protein (.1) AT1G58190 88 / 3e-18 AtRLP9 receptor like protein 9 (.1.2) AT4G20940 87 / 4e-18 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 87 / 4e-18 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G73066 86 / 1e-17 Leucine-rich repeat family protein (.1) AT4G20270 86 / 2e-17 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 84 / 6e-17 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007294 [exp] 416 / 4e-143 AT4G18760 391 / 1e-133 receptor like protein 51 (.1) Lus10005430 [exp] 381 / 4e-132 AT4G18760 293 / 3e-98 receptor like protein 51 (.1) Lus10039985 [exp] 154 / 3e-45 AT5G45770 120 / 3e-33 receptor like protein 55 (.1) Lus10029243 [exp] 148 / 5e-43 AT4G18760 168 / 2e-51 receptor like protein 51 (.1) Lus10005017 [exp] 92 / 1e-19 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10014500 [exp] 89 / 1e-18 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 89 / 1e-18 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037705 [exp] 86 / 3e-18 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10019035 [exp] 88 / 4e-18 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069500 [exp] 371 / 2e-125 AT4G18760 375 / 4e-127 receptor like protein 51 (.1) Potri.004G059500 [exp] 368 / 3e-124 AT4G18760 375 / 7e-127 receptor like protein 51 (.1) Potri.019G078400 [exp] 96 / 8e-21 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G235100 [exp] 92 / 2e-19 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 91 / 4e-19 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 90 / 7e-19 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G008450 [exp] 89 / 1e-18 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.008G211800 [exp] 88 / 1e-18 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.017G115900 [exp] 89 / 2e-18 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G175700 [exp] 89 / 2e-18 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10015226 pacid=23178792 polypeptide=Lus10015226 locus=Lus10015226.g ID=Lus10015226.BGIv1.0 annot-version=v1.0 ATGTCACCGCCGTTACTTCCACCACCGCCACCGCTCCTCTTCCTCTTCCTATTCCTCTCCTCCGCCGCCGCCGCTGCCATAACCCCACCGCCAACTCCTT CCCCAACCTCCTCTCCTATTCCTACCCAACCCAAACCCAACCCGTCATCTTCATCCCACTCTCCACTGGACCCAGACCAGATCAAAGCACTGAAATCACT CAGCATCCCTACTTCAAAAGACCCATGCTCTTCTGCCGGCGTTGCCACCTGCGACGGCGCATCTCCATTCCGCCACCTCACCTCCCTCCGACTAACAAAC TGCTCCGACGACCTCTCCCTCTCTTCCACCACCCTCAAATCCCTCTCAACTCTCGAATCTCTCACCTTCACAAACTGCCCCATTCTCCCACAACCATCCC ATTTCCCTTCAGATCTAGCTCTAAATCTCTATTCTTTCTCCTGTGCCAATTCCTTCAAACACCTGACGGGCGTCTTTCTATCACGCTTCACCAACCTCAC CGACCTCTCCATCGCCGACTCCCCAATCGCCGCCTCCGGGATCTACGTCGTCGTCGGGAATATGCGCAAGCTCACATCTTTAACCATCACCAACGCCAAT CTCTCCGGCGCCATCCCCAAACACCTCGCCGACAACAACAGCAACCTCACCGCCATCGACTTCTCACGCAATAGCCTCAAGGGAAGGATTCCAAGCTCGC TTGCTGTACTGGAGAATCTTCAAGCTCTCAATCTCTCATCCAATTCGCTCTCCGGCGAGCTCCCGGCAAACTTCGGCGACCTAATCTCACTGAAGAATGT ATCCCTAGCGTCGAATTCGTTGTCCGGTTCGATTCCGGATTCGATGGCCTCGATCTCCGAGCTGGAGCATCTCGATCTGAGCTCGAATCAGTTCAACGGC TCGATCCCCAAGTTCTTATCCGAGATGAAGAATCTGAAGCATTTGAATCTCGCTAACAATGGCTTCCATGGCGTTCTTCCTTTCAATGCGAGCTTTGTCA AGAAGCTGGATGTGTTTAGAATAAAAGGGAATGACAATCTCTGCTACAACCGTACAATTCTCTCGCAGTCGAAATTGAAGCTCGGGATTGCTGCTTGCGA TAAGCACGGATTGCCGGTTTCCCCGCCGCCGTCGAAGGATCTGACTTCAGGCGACGACAATAACGACGACGGTTACGACGGTGAAGATGATAGCAGCTCG AGTGGTAAGAAATCAGAGCATCATGGACCGAATAAGTTTGTTTTAGGGATTGCGATTGCTCTGTCCTCCATAGTTTTCCTCATCGCTTTCCTTATCTGTA TGGCTAAGAGATGTACCTGA
AA sequence Show only first row Show all	>Lus10015226 pacid=23178792 polypeptide=Lus10015226 locus=Lus10015226.g ID=Lus10015226.BGIv1.0 annot-version=v1.0 MSPPLLPPPPPLLFLFLFLSSAAAAAITPPPTPSPTSSPIPTQPKPNPSSSSHSPLDPDQIKALKSLSIPTSKDPCSSAGVATCDGASPFRHLTSLRLTN CSDDLSLSSTTLKSLSTLESLTFTNCPILPQPSHFPSDLALNLYSFSCANSFKHLTGVFLSRFTNLTDLSIADSPIAASGIYVVVGNMRKLTSLTITNAN LSGAIPKHLADNNSNLTAIDFSRNSLKGRIPSSLAVLENLQALNLSSNSLSGELPANFGDLISLKNVSLASNSLSGSIPDSMASISELEHLDLSSNQFNG SIPKFLSEMKNLKHLNLANNGFHGVLPFNASFVKKLDVFRIKGNDNLCYNRTILSQSKLKLGIAACDKHGLPVSPPPSKDLTSGDDNNDDGYDGEDDSSS SGKKSEHHGPNKFVLGIAIALSSIVFLIAFLICMAKRCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	0	1
AT3G49720			unknown protein		Lus10007228 [exp]	2.6	0.8978
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	2.8	0.8930
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	3.5	0.8567
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	3.9	0.8673
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	4.9	0.8535
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	7.4	0.8376
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	8.0	0.8496
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	9.9	0.8411
AT4G35320			unknown protein		Lus10001621 [exp]	10.6	0.8511
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	11.6	0.7873

Compare expression of checked genes

Lus10015226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.