Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 81 / 3e-18 unknown protein AT2G31560 47 / 1e-06 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015228 [exp] 125 / 2e-35 AT2G42760 115 / 5e-31 unknown protein Lus10007299 [exp] 106 / 6e-28 AT2G42760 115 / 7e-31 unknown protein Lus10005429 [exp] 105 / 9e-28 AT2G42760 111 / 1e-29 unknown protein Lus10041518 [exp] 58 / 8e-10 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019924 [exp] 44 / 3e-05 AT2G42760 56 / 7e-09 unknown protein Lus10026494 [exp] 43 / 3e-05 ND 36 / 0.004 Lus10029248 [exp] 45 / 0.0001 AT2G42760 61 / 6e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059900 [exp] 103 / 6e-27 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 92 / 1e-22 AT2G42760 89 / 4e-21 unknown protein Potri.006G129800 [exp] 53 / 3e-08 AT2G42760 65 / 4e-12 unknown protein Potri.007G126700 [exp] 45 / 6e-06 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 42 / 0.0001 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10015227 pacid=23178729 polypeptide=Lus10015227 locus=Lus10015227.g ID=Lus10015227.BGIv1.0 annot-version=v1.0 ATGCAAAGCTTCAAGAACAACCACCTAGCAATTTCATCCCACGAATCGCCGCCGGACTCCCCAACGCTAGCAAGCATGTACATGCAAATCCACAAGCAAC GATCTCCGCCGCCGCCGCCGGAGTTCTCGAACTTAAGACCCCGCCAACTCAACCGATCAACCTTCGCCAAATCCGTCAGCGAGGAGGATTTCCACACCTC CAAGCCGGCGTTCAACCCTTCTCCGGCCTCAATCCTCACTCCCCACCTCACCACCATCCTCTCGGGAAAAGAATTCTGCACCGACGAGCTCGAAGAACTG ACCGAATCGAGCAATTCGCCTCCTCCTCCGCCGCCGCCGCGGCAGCAGCGGAGGCAGAGGAAAATCAGGGGGAGCAAGAGCTTGACGTCTTTGGAGTGCG AGGAGATTAAAGGGTTTATGGATCTTGGGTTTGTGTTCTCCGAGAAGGATAAGGATTCGAGGTTGGTTTCGATTTTGCCTGGGTTGCAGAAATTGGGGAA AACAGAGGAGTCAGAGGAGGATGAGAAGAAGGAAAAGAGGAAGATTGTTAAGCGGCCATTGATGAATTTGAGAGTTTCGGTCGGGAGCGATGTTGAGTTG AAAGATAGGTTGAGAATGTGGGCTCACACTGTTGCGTCCACTGTTCGATAG
AA sequence Show only first row Show all	>Lus10015227 pacid=23178729 polypeptide=Lus10015227 locus=Lus10015227.g ID=Lus10015227.BGIv1.0 annot-version=v1.0 MQSFKNNHLAISSHESPPDSPTLASMYMQIHKQRSPPPPPEFSNLRPRQLNRSTFAKSVSEEDFHTSKPAFNPSPASILTPHLTTILSGKEFCTDELEEL TESSNSPPPPPPPRQQRRQRKIRGSKSLTSLECEEIKGFMDLGFVFSEKDKDSRLVSILPGLQKLGKTEESEEDEKKEKRKIVKRPLMNLRVSVGSDVEL KDRLRMWAHTVASTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42760			unknown protein		Lus10015227 [exp]	0	1
AT1G05510			Protein of unknown function (D...		Lus10021483 [exp]	5.3	0.8294
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	13.7	0.8393
					Lus10032770 [exp]	24.3	0.8376
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	29.3	0.8330
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	38.5	0.8282
					Lus10007554 [exp]	39.5	0.7911
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	43.7	0.8248
					Lus10020978 [exp]	52.5	0.8064
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	54.7	0.7762
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039486 [exp]	60.5	0.7446

Compare expression of checked genes

Lus10015227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.