Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29280 176 / 3e-54 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 129 / 6e-36 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 106 / 3e-26 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 103 / 2e-25 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT4G01250 97 / 1e-23 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G52830 96 / 1e-22 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G31550 95 / 1e-22 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G30590 96 / 2e-22 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT2G23320 94 / 3e-22 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT2G24570 93 / 8e-22 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005428 [exp] 316 / 2e-109 AT1G29280 194 / 1e-61 WRKY DNA-binding protein 65 (.1) Lus10007305 [exp] 141 / 2e-41 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 141 / 9e-41 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10038426 [exp] 104 / 2e-26 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10041600 [exp] 98 / 1e-23 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10032303 [exp] 97 / 2e-23 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10020136 [exp] 97 / 3e-23 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10026936 [exp] 97 / 3e-23 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10006261 [exp] 97 / 5e-23 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G060900 [exp] 196 / 3e-62 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1) Potri.011G070100 [exp] 187 / 1e-58 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.011G157100 [exp] 106 / 3e-26 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 106 / 4e-26 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.014G119800 [exp] 99 / 2e-24 AT3G58710 124 / 7e-34 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) Potri.003G132700 [exp] 100 / 3e-24 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.002G195300 [exp] 97 / 4e-24 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Potri.007G047400 [exp] 98 / 9e-24 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.018G139300 [exp] 97 / 1e-23 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.002G164400 [exp] 98 / 2e-23 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10015229 pacid=23178801 polypeptide=Lus10015229 locus=Lus10015229.g ID=Lus10015229.BGIv1.0 annot-version=v1.0 ATGGAAGACGACGAGGAGCATGACAACACAACCGGAAGTGGCCCAGACGGCATGAAGCTCACCTCTACTACTTCCTCCCCCAAACCAAGTAAGCGTGGAT TACGTAAAAGAGTGGTGTCCATACCGATCAAGGAAGTAGAAGGTGTTTCTTCTTCGTGTAGACTCAAAGGATCGGAGATCTCTTCCCCGCCGTTGGATTC TTGGGCTTGGAGAAAATATGGGCAAAAACCCATCAAGGGATCTCCTTATCCTAGAGGATATTACAAGTGTAGCAGTTGGAAAGGATGCCCAGCTAGAAAA CAAGTGGAGAGGAGCCGGGTGGACCCCACAACGTTAGTGGTCACCTACTCCTCCGACCACAACCACCCTTCGGCGCCGCCGCCGCCGACCCGGCCCCACC ACCATAATCCAAAACTCGCCGCCGTCGACCCGGATACACCGCCCGCAAACCCGGAACCTGAACCCAATCCTGATCGGGAGAGGTTCGCTAATTTTGAAGA CGAGTTCTCCTGGTTCGGAGAAATGGAAGCGACGTCGTCGTCGGCGATCCTCGACACCCCGTTATTGGTGGCGGTGGATGTGGAGATGTTTTCGTCGTTG GATGTGTTTTTGCCGATGAGGGAAGAGGATGATGAGTCGTTGTTTGCGGATCTGGGAGAGTTGCCGGAGTGTACGTCGGTGTTCAGGCACCACCGTGGGA TGGGAACGGAGGGGGGGGTCACCGTGGGATGGGAACGGAGGTGCAGATCTGCTGACCGGACGGCAGGTTGTTTACTTTTGATTGGTTCATGGCCGTAA
AA sequence Show only first row Show all	>Lus10015229 pacid=23178801 polypeptide=Lus10015229 locus=Lus10015229.g ID=Lus10015229.BGIv1.0 annot-version=v1.0 MEDDEEHDNTTGSGPDGMKLTSTTSSPKPSKRGLRKRVVSIPIKEVEGVSSSCRLKGSEISSPPLDSWAWRKYGQKPIKGSPYPRGYYKCSSWKGCPARK QVERSRVDPTTLVVTYSSDHNHPSAPPPPTRPHHHNPKLAAVDPDTPPANPEPEPNPDRERFANFEDEFSWFGEMEATSSSAILDTPLLVAVDVEMFSSL DVFLPMREEDDESLFADLGELPECTSVFRHHRGMGTEGGVTVGWERRCRSADRTAGCLLLIGSWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	0	1
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10001059 [exp]	3.2	0.9115
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	4.0	0.9156
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	5.3	0.8817
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	6.0	0.8692
AT1G49180			protein kinase family protein ...		Lus10020855 [exp]	7.5	0.8810
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	12.0	0.8565
AT5G58300			Leucine-rich repeat protein ki...		Lus10039422 [exp]	13.0	0.8492
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	14.3	0.8579
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	15.0	0.8951
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	15.5	0.8678

Compare expression of checked genes

Lus10015229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.