Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29300 348 / 1e-116 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 301 / 2e-98 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 300 / 2e-97 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 242 / 1e-75 Plant protein of unknown function (DUF641) (.1) AT3G60680 171 / 7e-48 Plant protein of unknown function (DUF641) (.1) AT4G34080 146 / 9e-41 Plant protein of unknown function (DUF641) (.1) AT4G33320 137 / 2e-37 Plant protein of unknown function (DUF641) (.1) AT2G32130 128 / 3e-35 Plant protein of unknown function (DUF641) (.1) AT5G58960 124 / 4e-31 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G30380 92 / 6e-20 Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005424 [exp] 679 / 0 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 504 / 1e-177 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 496 / 3e-174 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 233 / 4e-72 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 229 / 2e-70 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 174 / 4e-49 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 143 / 5e-38 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 144 / 9e-38 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10008587 [exp] 142 / 1e-37 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071000 [exp] 426 / 6e-147 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 419 / 1e-144 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 322 / 3e-106 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 318 / 1e-104 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 245 / 8e-77 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 170 / 1e-47 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 169 / 3e-47 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 148 / 8e-40 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 145 / 8e-38 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G067600 [exp] 135 / 5e-36 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10015232 pacid=23178761 polypeptide=Lus10015232 locus=Lus10015232.g ID=Lus10015232.BGIv1.0 annot-version=v1.0 ATGGAAACGACGACGACGACGACACTCCGACCAATCCCCGACGGAAAAAACAAGAGCAAGATCGCCACAAAATTCCACAAATCAATCAAACTCAACGCCG CCGATAAAAACCAATCCAAGGCCAAGCGAACCGCCGTCCTGGAAGCACTCCTGGCCAAGATGTTCGCCGAGGTAACCTCCATTAAAGCCGCGTACGCCGA GCTCCAGACGGCTCAGAATCCTTACAACGAGGAGAATATCCAGTCCGCCGACCACGACATCGTCGAGGAGCTCAAGACTCTCTCCCACCTGAAACGAAGC TTCCTCAGAGGCGAGCTCGATCTGATCTCGCCGCAGGTGACCGTGATGCTTGCCGAGATTCAGGAGCAGCAGAGCCTGATCAAGACTTACCAGATCACTA TCAAGAAGCTCGAAGCCGAATCGGATTCGATATCGTCGGAGATCGAATCGATTAAGAAGCTTCTGGATGATTGCGTGTCGTTGAATCGGTCGATTGAGAA GAAGCTGAATTGCAGCGGTAATCAATCGGCAGCGATTATGTTCGATTTCGAGCTCAACGATCTTAATCCGTCTCATTTCGTAAGATTCCTTCCCTACGCT TCGAGATCGGTGAGAAGCTTCACGAAATTGATGATCCGTGAGATGGAATCAGCTCGTTGGGATCTCAATTCAGCAGCGAGAGCAATCGAACCGGAATTAG GTTTTCCGAAATCGAAATCGGATCGATGTTTCATTTTCGAGTCGTTTGTGGGGAAGATGATGTTCGAAGGTTGTTTCAATCAGAAGGAATCATTAACAAT CCGCCGCGAGGATTTGTTCAGCGAGTTCAAGAAGATGAAATCAGCGAATCTCCGGCAATATCTGGCGAGGAATCCGAGCTCGTCGTTGGCGAATTTCACC AGAGCGAAGTATACGCTTCTGGTGCATCCGAAAATGGAGTGTTCGCTGTTTGGCAATTTGAATCAGAGGAAAGCGGTGATAGGAGGCGTGTTTCCCGATA CGGAGTTCTTCGGCCAGTTCGCGGAGATGGCGAGGCGCGTGTGGGTTTTGAATCTGCTGGCGATGTCGTTCGGCGAGAGTCTGCATGTTTTTCAGGTCAG GAAGAGCTGCCAGTTCTCGGAGGTGTATATGGAGAGTGTGAGCGAGGAGTACGGCGGCGGTGGTGGTGATCTTCGGGTGGGGTTTACGGTGGTTCCGGGG TTTAAGATTGGGAAGACGGTGATACAGAGTCAGGTTTATTTGACGCCGGCGACGAAGGATACGTCGTCGTCTCCGGTCCGGTGTTGA
AA sequence Show only first row Show all	>Lus10015232 pacid=23178761 polypeptide=Lus10015232 locus=Lus10015232.g ID=Lus10015232.BGIv1.0 annot-version=v1.0 METTTTTTLRPIPDGKNKSKIATKFHKSIKLNAADKNQSKAKRTAVLEALLAKMFAEVTSIKAAYAELQTAQNPYNEENIQSADHDIVEELKTLSHLKRS FLRGELDLISPQVTVMLAEIQEQQSLIKTYQITIKKLEAESDSISSEIESIKKLLDDCVSLNRSIEKKLNCSGNQSAAIMFDFELNDLNPSHFVRFLPYA SRSVRSFTKLMIREMESARWDLNSAARAIEPELGFPKSKSDRCFIFESFVGKMMFEGCFNQKESLTIRREDLFSEFKKMKSANLRQYLARNPSSSLANFT RAKYTLLVHPKMECSLFGNLNQRKAVIGGVFPDTEFFGQFAEMARRVWVLNLLAMSFGESLHVFQVRKSCQFSEVYMESVSEEYGGGGGDLRVGFTVVPG FKIGKTVIQSQVYLTPATKDTSSSPVRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10015232 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	3.0	0.9144
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	4.5	0.9275
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	8.0	0.9153
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	8.9	0.8974
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	9.3	0.8629
AT1G63310			unknown protein		Lus10033253 [exp]	17.0	0.8971
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	17.6	0.8620
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	18.4	0.8845
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	19.6	0.8414
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	20.4	0.8829

Compare expression of checked genes

Lus10015232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.