Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76570 444 / 1e-158 Chlorophyll A-B binding family protein (.1) AT3G27690 208 / 2e-66 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT2G05100 208 / 2e-66 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT2G05070 206 / 2e-65 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT5G54270 198 / 1e-62 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1) AT1G29930 196 / 7e-62 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29920 196 / 8e-62 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 196 / 8e-62 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT2G34420 194 / 3e-61 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT2G34430 191 / 8e-60 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005421 [exp] 562 / 0 AT1G76570 454 / 4e-161 Chlorophyll A-B binding family protein (.1) Lus10001169 [exp] 218 / 3e-70 AT3G27690 484 / 1e-175 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10001741 [exp] 217 / 7e-70 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10008191 [exp] 208 / 3e-66 AT1G29910 452 / 5e-163 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10027966 [exp] 206 / 2e-65 AT1G29910 446 / 2e-160 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10008594 [exp] 204 / 6e-65 AT1G29930 445 / 4e-160 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10042219 [exp] 204 / 8e-65 AT1G29930 444 / 1e-159 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10037875 [exp] 199 / 8e-63 AT5G54270 460 / 3e-166 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10038575 [exp] 197 / 2e-62 AT5G54270 462 / 9e-167 light-harvesting chlorophyll B-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G258600 [exp] 457 / 3e-163 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.014G165100 [exp] 205 / 3e-65 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.002G221400 [exp] 201 / 1e-63 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.001G407100 [exp] 200 / 3e-63 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.011G126700 [exp] 198 / 4e-63 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.005G239200 [exp] 197 / 4e-62 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239300 [exp] 197 / 4e-62 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.011G079500 [exp] 196 / 7e-62 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.002G189300 [exp] 192 / 3e-60 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.019G063101 [exp] 177 / 4e-54 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10015235 pacid=23178790 polypeptide=Lus10015235 locus=Lus10015235.g ID=Lus10015235.BGIv1.0 annot-version=v1.0 ATGCCGCGATTGAAGGTCGCCGGAGTTGTGGCGTTCTCGGCGATCCCGTTCACTGCCGTCAAAGCGATCGCGAACAGCTCACTGGGAGAGGCGCTCCGGA CGCGTTTGGAGGAGCGGAAGAAAGTCGCGATCAAGGAATCCGCTGAATTCCGGCGTTTGGCAGAGAAAGCCCGACGAGATAGCATTTGGTATGGAGAAGA TCGTCCACGGTGGCTGGGGAGCATTCCGTATGATGATTACTCGCCACATCTAGCCGGTGAACTCCCCGGAGACTATGGATTTGATGTTGCAAACCTCAGT GAAGACCCTAGTGCTCTCCAGAAGTACTTCAATTTCGAGATACTGCATTGTAGATGGGCAATGCTAGGTGCTCTTGGTGCTGTGATTCCTGAAGTGTTGG ATTTGCTCGGTGCAGTCGATTTCAGTGAGCCTGTCTGGTGGCGAGTTGGCTACGCCAAGCTTCAGGGAGATACTCTGGACTATCTGGGAATTCCAGGGCT TCACTTGGCTGGAAGCCAAGGAATCATCGTCATTTCTCTCTGCCAAGTTCTTCTAATGGTCGGACCGGAATATGCGCGATACTGCGGGATCGAGGCGTTG GAGCCTTTAGGAATCTACTTACCTGGCGATGAGAACTACCCAGGAGGGTCATTGTTCGATCCGCTGAACCTCGCTGGGGAACCTTCAGCCTTCGAGGAGC TGAAGGTGAAGGAGATCAAGAACGGTCGGCTGGCGATGGTCGCTTGGTTAGGATTCTACGTCCAAGCTGCTGTTACTGGCAAAGGACCTATTCAAAACCT CGTGGAGCATGTTTCGGATCCTTTTCATAACAATGTACTGTCAGTGCTCAAGATCATGTAA
AA sequence Show only first row Show all	>Lus10015235 pacid=23178790 polypeptide=Lus10015235 locus=Lus10015235.g ID=Lus10015235.BGIv1.0 annot-version=v1.0 MPRLKVAGVVAFSAIPFTAVKAIANSSLGEALRTRLEERKKVAIKESAEFRRLAEKARRDSIWYGEDRPRWLGSIPYDDYSPHLAGELPGDYGFDVANLS EDPSALQKYFNFEILHCRWAMLGALGAVIPEVLDLLGAVDFSEPVWWRVGYAKLQGDTLDYLGIPGLHLAGSQGIIVISLCQVLLMVGPEYARYCGIEAL EPLGIYLPGDENYPGGSLFDPLNLAGEPSAFEELKVKEIKNGRLAMVAWLGFYVQAAVTGKGPIQNLVEHVSDPFHNNVLSVLKIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	0	1
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	1.7	0.8871
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	2.0	0.8736
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	2.4	0.8601
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	3.3	0.8489
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	3.5	0.8617
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	5.0	0.8613
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	5.6	0.8067
AT5G46030			unknown protein		Lus10015293 [exp]	6.7	0.8626
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	7.5	0.8596
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	8.0	0.8312

Compare expression of checked genes

Lus10015235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.