Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18830 107 / 6e-26 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G01840 98 / 3e-23 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT5G58360 97 / 1e-22 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT1G06920 97 / 2e-22 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT2G30400 96 / 4e-22 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G19650 71 / 4e-14 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 71 / 2e-13 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 63 / 1e-11 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 56 / 6e-09 OFP Ovate family protein (.1) AT2G36030 50 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025241 [exp] 97 / 4e-22 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 96 / 1e-21 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10014164 [exp] 89 / 1e-20 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10008589 [exp] 91 / 2e-20 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10042224 [exp] 91 / 5e-20 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10011092 [exp] 81 / 9e-17 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 79 / 3e-16 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 73 / 3e-14 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 65 / 8e-12 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062100 [exp] 192 / 4e-57 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.006G107700 [exp] 97 / 3e-22 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.019G128500 [exp] 96 / 9e-22 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.013G155200 [exp] 96 / 1e-21 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.016G134200 [exp] 96 / 1e-21 AT1G06920 117 / 1e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.006G156176 [exp] 79 / 3e-16 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.018G080100 [exp] 78 / 5e-16 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.009G161700 [exp] 73 / 4e-15 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.002G262500 [exp] 74 / 2e-14 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.007G028000 [exp] 73 / 6e-14 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10015236 pacid=23178760 polypeptide=Lus10015236 locus=Lus10015236.g ID=Lus10015236.BGIv1.0 annot-version=v1.0 ATGAAGTGGGGGAAGAACAAGGCTGTTGCTTCATCACCATCGCCATCACCTTCTGCTTCTTCTCGGCCATTCTTGATTTCTCATGTGATTCCTGCTTCTT GGCTGACAAAGTTCAAGCAAATGAGCGTCAGTCCACGGCACACTCAACAACAAAATGCGACGAAATCGAACAGAAAAGGAGGGAAACTGAATTCGAATCC TGCAATCACACGATTCACCTCTCCGAATTGTACACCGGTAGGAGGGAGATTCTACAGCGCTGATGGTGACGATGCGTTTTGGAGGCTCTCATTTGGAGCT GATGATGGTGAGGAGTACTACATCTCCGATGAAGATGATGAAGTCAGGTTTCCGCCACCGAGTTGCAGGAGCTGCTGCACTAGATCGAATAGAGTAGGGG CGAAAATGAGGGAGGAGGAGGTGGCTAAGAGTTTCACATTGCCGTTGGATATTGGGAATTTTCCAGTGGTGGAAAGAGACAAGGCTATGGAAATTACAAA TCCTAGGATAAGATCGGAGAAGAAGAAGAACAAGAAGGTGAAGAAATCAAAACAGAGGGTCTTCGAATTGGGTTCGGAGGGAGAATTTAAACTGGCGGGA TCGGAATTAAGCAACTCACTTCCGCAGATGGATGGAAATGGAAGTGCATGGAATGCCCAGAAGCAAAGTTACGAAATTTCAGCGGTGAATTATTCCCCAC ATTACTGGGGGGAATTGGAAGAAACTAAAATGGAAGACAAGAGGAAGTCTCTGTACATAAGAATAGAGCCGTTACAGAGGAAACAGAGTAACAAGAGGCA GGGAGGGAAAGAGAGAGCTCACCGTCATTCACCGAGGACGCCAGCCCGATCTGAGGTCTGCAAAATCAGAGCAATCGAAGATATGAGAAGATCGGGTTCA AAGACGACGAAGCCAAAGGCCAAGCCTGTGATGAAGAGCTTTGCAGTGGTAAAAAGCTCCTATGATCCAGAGAATGACTTCAAGGAGTCGATGATTGAGA TGATCCAGGAGATGAAAATTCGGAAGACCGAAGAGCTGGAAGAACTCTTGGCCTGCTACCTGATGCTGAATTGCGAGGAATATCATGAGCTCATCATCAA TGTGTTTCGCGAGGTATGGTTCGATCTGAACCACCACGCTGGCTTATCCTGGTCAAGAGATTCAGTTCATATGTAA
AA sequence Show only first row Show all	>Lus10015236 pacid=23178760 polypeptide=Lus10015236 locus=Lus10015236.g ID=Lus10015236.BGIv1.0 annot-version=v1.0 MKWGKNKAVASSPSPSPSASSRPFLISHVIPASWLTKFKQMSVSPRHTQQQNATKSNRKGGKLNSNPAITRFTSPNCTPVGGRFYSADGDDAFWRLSFGA DDGEEYYISDEDDEVRFPPPSCRSCCTRSNRVGAKMREEEVAKSFTLPLDIGNFPVVERDKAMEITNPRIRSEKKKNKKVKKSKQRVFELGSEGEFKLAG SELSNSLPQMDGNGSAWNAQKQSYEISAVNYSPHYWGELEETKMEDKRKSLYIRIEPLQRKQSNKRQGGKERAHRHSPRTPARSEVCKIRAIEDMRRSGS KTTKPKAKPVMKSFAVVKSSYDPENDFKESMIEMIQEMKIRKTEELEELLACYLMLNCEEYHELIINVFREVWFDLNHHAGLSWSRDSVHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Lus10015236 [exp]	0	1
					Lus10040954 [exp]	7.1	0.8979
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020034 [exp]	7.1	0.8631
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	13.8	0.8857
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	18.6	0.8855
AT4G10970			unknown protein		Lus10023075 [exp]	30.7	0.8834
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	31.6	0.8649
AT1G70620			cyclin-related (.1.2.3)		Lus10026699 [exp]	35.8	0.8343
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	36.7	0.8685
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	40.3	0.8616
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	41.0	0.8245

Compare expression of checked genes

Lus10015236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.