Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18880 338 / 9e-114 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT5G45710 313 / 7e-105 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G16820 173 / 3e-49 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT1G32330 173 / 4e-49 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 166 / 2e-46 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 164 / 2e-46 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT4G17750 166 / 3e-46 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 160 / 2e-45 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT4G13980 157 / 2e-43 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT5G03720 144 / 1e-38 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005420 [exp] 680 / 0 AT4G18880 348 / 1e-116 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10007318 [exp] 533 / 0 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10029269 [exp] 328 / 2e-111 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10030956 [exp] 184 / 4e-53 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10000312 [exp] 182 / 7e-53 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 182 / 1e-52 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040091 [exp] 181 / 4e-52 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10016634 [exp] 175 / 7e-50 AT4G13980 446 / 5e-154 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10022546 [exp] 169 / 3e-47 AT4G13980 440 / 2e-151 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071700 [exp] 468 / 9e-165 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.004G062300 [exp] 457 / 1e-160 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 244 / 1e-76 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.001G138900 [exp] 181 / 1e-51 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 178 / 6e-51 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.001G320900 [exp] 173 / 5e-49 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.013G079800 [exp] 170 / 9e-48 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.017G059600 [exp] 169 / 1e-47 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.005G214800 [exp] 155 / 1e-43 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 153 / 8e-43 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10015237 pacid=23178724 polypeptide=Lus10015237 locus=Lus10015237.g ID=Lus10015237.BGIv1.0 annot-version=v1.0 ATGGATGAAACACAGGGCGGTTCTGGTTCGCTGCCACCTTTTCTGGCGAAGACATATGAAATGGTTGACGATCCTTCCTCAGATTCGGTAGTGTCATGGA GTTCGAGCAATAAAAGCTTCATAGTATGGAGTCCGCCGGAGTTTTCACGCGATCTGCTCCCTAGATTCTTTAAGCATAACAATTTCTCCAGCTTCATTAG ACAGCTTAATACTTATGGATTCAGGAAGGCAGATCCAGAACAATGGGAATTCGCAAACGAAGATTTCGTAAGAGGACAGCCACACCTTATGAAGAACATC CACAGACGGAAGCCTGTCCATAGCCATTCTATGCAGAACGTACAAGTGCAGCAGCAAGGGTCTAATAATAATCCATTAACTGATGCGGAGAGGCGAAGTT TGAAAGGTGACATTGAGAGGCTTAGACGTGATAAACAAGTGCTTGTTTCGGAGTTGCAGAGGAAAGAACAGGAGAGACGGGGATTCGAGCTGCAAATGAC AGCATTGAGAGGCAAGTTTCAAGACCTGGAAAAACGTCAGCAGACCATTTCGGCTTGCCTTACAAAAGCATTGAAGCAGCCAGGGCTACCGTTGGATCTC ATGCCGAAATTCGACAGAAAGAGGAGGCTACCTAGGCTAGGTTGTATCGACGATGATCCCATGAAAGAGGACACTCAAATGGAGGTATCCACATGTCATG CTAGAGAAAGTACAGCTCTTTCGAATTTGGAGAGGTGCGAGCAGTTGGAGTCGTCCTTGACATTTTGGGAGAACGTTGTGAATGATGTTCGTCAAACGGC ACCACCTTTCATACGGCAAGCATCGTCCATGGTGGAAATGGATGAGTGTACAAGTTGTGCAGATAGCCCCACACCATCTATTCTGCAACTAAACATCGAT GTTCATCCGAAATCCCCCGGCATTGACATGAACTCTGAACCTTCTGTGCCCGGAACCGGAGAGCTCAGTCCTCCAAAGGAACAGACTACAGGAACTGCAG CCGGAGTGAATGATGTATTCTGGGAGCAATTGTTGACAGAGAATCCTGGCTCAGCAGATGCACAGGAAGTTCAGTCAGAAAGACGGGATTCGGACAGTAG GAAAAATGATAACAAACCTAGTAGTGACCATGGAAGAAATTGGTGGAATATGAGGAGTGTAAATGGTCTTGCAGGACAGGTTGGACCTCTTACCCCGGCA GAAAGAACTTGA
AA sequence Show only first row Show all	>Lus10015237 pacid=23178724 polypeptide=Lus10015237 locus=Lus10015237.g ID=Lus10015237.BGIv1.0 annot-version=v1.0 MDETQGGSGSLPPFLAKTYEMVDDPSSDSVVSWSSSNKSFIVWSPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANEDFVRGQPHLMKNI HRRKPVHSHSMQNVQVQQQGSNNNPLTDAERRSLKGDIERLRRDKQVLVSELQRKEQERRGFELQMTALRGKFQDLEKRQQTISACLTKALKQPGLPLDL MPKFDRKRRLPRLGCIDDDPMKEDTQMEVSTCHARESTALSNLERCEQLESSLTFWENVVNDVRQTAPPFIRQASSMVEMDECTSCADSPTPSILQLNID VHPKSPGIDMNSEPSVPGTGELSPPKEQTTGTAAGVNDVFWEQLLTENPGSADAQEVQSERRDSDSRKNDNKPSSDHGRNWWNMRSVNGLAGQVGPLTPA ERT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	0	1
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	2.6	0.9325
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	3.5	0.9181
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	3.9	0.9186
AT5G15080			Protein kinase superfamily pro...		Lus10005255 [exp]	7.5	0.8918
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	8.4	0.9134
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	8.8	0.9125
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10034331 [exp]	9.3	0.8841
AT1G71110			unknown protein		Lus10013492 [exp]	9.5	0.8954
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	9.9	0.8951
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	10.0	0.8721

Compare expression of checked genes

Lus10015237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.