Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78700 294 / 3e-98 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT4G18890 154 / 1e-44 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT3G50750 110 / 5e-28 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT1G19350 103 / 8e-25 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT1G75080 100 / 4e-24 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT4G36780 98 / 2e-23 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT5G45300 60 / 1e-09 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 48 / 7e-06 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005419 [exp] 500 / 3e-179 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10007319 [exp] 311 / 8e-105 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1) Lus10029270 [exp] 310 / 5e-104 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10026036 [exp] 122 / 3e-32 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014327 [exp] 117 / 4e-30 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 108 / 1e-26 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10010795 [exp] 104 / 2e-25 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10035679 [exp] 61 / 6e-10 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10018842 [exp] 52 / 5e-07 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062400 [exp] 338 / 2e-115 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1) Potri.011G071800 [exp] 334 / 5e-114 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1) Potri.011G106800 [exp] 282 / 7e-94 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.003G026600 [exp] 275 / 6e-91 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 275 / 8e-91 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.005G126400 [exp] 113 / 2e-28 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.014G041600 [exp] 105 / 9e-26 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.007G030700 [exp] 103 / 4e-25 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 90 / 3e-20 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.016G125700 [exp] 70 / 2e-14 AT1G19350 82 / 1e-18 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10015238 pacid=23178711 polypeptide=Lus10015238 locus=Lus10015238.g ID=Lus10015238.BGIv1.0 annot-version=v1.0 ATGACGTCGGGGTCGAGAATGCCCACGTGGAAGGAGAGGGAGAACAACAAGAGGCGAGAGCGGCGGAGGAGAGCCATCGCCGCCAAGATCTACTCCGGCC TCAGGATGTACGGAAACTACAAGCTCCCCAAACACTGCGACAACAACGAGGTCCTCAAGGCTCTCTGCAACGAAGCTGGATGGATCGTCGAAGAAGACGG CACTACTTACAGAAAGGGGTGCAGACCTGTTGAAAGAATGGATATAATGGGAGGAGGGTCAACATCAGCTAGTCCATGCTCATCATACCAACCAAGTCCA TGTGCATCCTACAACCCGAGTCCTGCCTCGTCTTCATTTCCCAGCACTATTAATTCGTCTCGTTACAACGCTACAAATCCTAACGGAAACACCGATGCCA ATTGCCTCATACCCTGGCTTAAAAACCTCTCCTCCAGCTCATCTTCGTCCTCCTCGAAACACAATCATCATCCTCACAACCTCTACATTCACACCGGTTC CATCAGTGCTCCAGTAACGCCTCCGCTGAGTTCCCCGACAGCAACGAGTCCCCCTCGTGGTGATCATGCCCATCTAGCTGCTGGCTCATTCCCTTCGTGG GGAGGAGGGCAAAGTAGCTACCCAATATTCCAGCCTTCGTCGTCGATGCCTTCATCTACCCCGCAGAGTCCTGGTCGAAGCCAGCCTGATTCCGGATGGC TAGCTGGGATCCAGAGTGGACCTTTGTCTCCAACGTTCAGCCTCATGTCGCGGAACCCGTTTGGGTGGAGAGACGAGCCGGTATCTGGGGCAGGGTCGAG AATGTGGACACCTGGACAGAGCGGGACTTGTTCTCCTGCTGTTCCGGCAGGGGTTGACCATACGGCAGATGTTCCGATCGTGGATAGCGGAATGACGGCT GAGTTTGCTTTTGGTAGTAGTAGTAATGGAGGAGGTAGCAGGTTAGTGAAGGCATGGGAAGGAGAGCGTATACATGATGAGTTGATATCTGATGATCTTG AGCTTACACTCGGAAACTCCAAAACCAGGTGA
AA sequence Show only first row Show all	>Lus10015238 pacid=23178711 polypeptide=Lus10015238 locus=Lus10015238.g ID=Lus10015238.BGIv1.0 annot-version=v1.0 MTSGSRMPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEEDGTTYRKGCRPVERMDIMGGGSTSASPCSSYQPSP CASYNPSPASSSFPSTINSSRYNATNPNGNTDANCLIPWLKNLSSSSSSSSSKHNHHPHNLYIHTGSISAPVTPPLSSPTATSPPRGDHAHLAAGSFPSW GGGQSSYPIFQPSSSMPSSTPQSPGRSQPDSGWLAGIQSGPLSPTFSLMSRNPFGWRDEPVSGAGSRMWTPGQSGTCSPAVPAGVDHTADVPIVDSGMTA EFAFGSSSNGGGSRLVKAWEGERIHDELISDDLELTLGNSKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10015238 [exp]	0	1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	1.7	0.8718
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	11.3	0.8602
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	13.3	0.8627
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	13.5	0.8439
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10016565 [exp]	14.0	0.7440
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	15.2	0.8635
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	16.4	0.8299
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	19.5	0.8488
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10036919 [exp]	20.5	0.7869
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10025262 [exp]	23.9	0.8342

Compare expression of checked genes

Lus10015238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.