Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 1155 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 863 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29740 859 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 857 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 844 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 840 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 825 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 821 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 808 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 639 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005418 [exp] 1271 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 854 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 816 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 763 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 745 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 714 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 706 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 649 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 325 / 6e-102 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072566 [exp] 1414 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063500 [exp] 1390 / 0 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072300 [exp] 1068 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063200 [exp] 1058 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072866 [exp] 946 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072941 [exp] 944 / 0 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 941 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 939 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072966 [exp] 937 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 936 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10015239 pacid=23178726 polypeptide=Lus10015239 locus=Lus10015239.g ID=Lus10015239.BGIv1.0 annot-version=v1.0 ATGGGTACAAAATACTGGCAGTTCAATGCTGATACCTGCGACGTAGAAGAGGTGGGAATGACCAAAGTGCCCCCAAGGAATGCTGAGCACACCATTGAGT GCACTTGCAACAATGGCAGCAACACAGATTGTCACGTCGTAAGGATGGCGCTTAAGAATCACAACCTTCCTGGGAACCTTCCACCTCAGTTGGTCAAGCT TCCTTACCTCCAACAAGTTGATTTTGCTTACAACTACCTGAATGGATCGGTCCCACGCGAATGGTCGTCAATGCAGTTGTCTTCAATTTCTGTTCTTGTC AACCGTCTGTCAGGAAAGATTCCAAAGGAGTTGGGAAACATTACTACTCTCACATACTTAAGTCTTGAAGCAAACCAATTTTCCGGTACTGTTCCTCCTG AGCTCGGAGAGCTGGTCAACTTAGAAACATTGATGCTGTCATCCAATCAGTTGACTGGACCTTTGCCAGTATCATTTGCAGGGTTGATGAACCTGACTGA TTTTAGGATAAATGATAATAGCTTAAACGGGAGAATTCCTAATTTCATACAGAACTGGAAAAAACTCACCAGATTAGAGATGCAGGGGAGCGGGCTGGAG GGACCGATTCCGCCAAGCATTTCCCAGTTGACTAATTTAGTTGAGTTGAGAATCACCGATATAAGTGGACCCAGTCAAGGTTTCCCTGAGTTGGTCAATG CGACAGGCATATTACGATTCATTTTGAGGAACTGCAGCCTTTCGGGGGAGCTCCCTGACTATGTCTGGTTGATGAAGAATATGGAAATGTTGGATGTCAG TTTCAACAAGTTGACAGGAAAAATTCCTACAACAATACCTTCAGAACGTTTGAGATTTGTATTCTTGACTGACAACTTGCTAAGTGGAGATGTTCCTGAT TCAATCTTGAAGCAAGGAAGCAACATTGACCTATCATACAATAACTTCGAATTGCAAGGACCTGGACAGCCTGCTTGTCAAGACAACATGAATCTAAACA TGAACTTATACCGGAGCTCATCAGCAGCAAACAACACAAGTCGAAGCCTCCCCTGCACGAACACATTCACATGTCCTCGATATTCGAACTGTTTACATGT CAACAGTGGCGGAAAGGACTTGACTGTCAAGGAAAACAAAACCACTATACTATACGAAGGAGATTCACAAATGTTAGGTGGCACAGCAAGATACTTCCTG AATGAGCAGAGCTACTGGGGAATCAGTAGCACAGGGGACTTCATGGATGACAATGATTACCAAAATACTCGTTACACCGTAGCTATACAATCATCGAGCA TCCCTGAGTTGTATCAAACTGCTCGAATCGCTCCGATATCTCTCACTTACTTCCACCACTGTTTAGAAAATGGCAAGTACACTGTGAAGCTACATTTTGC GGAGATCGTGTTTAGTAACGACAGAACGTATACTAGTCTTGGCAAGCGTGTATTCGATGTCTATGTTCAGGGAAAACTAGAGCAGAAGGATCTCAATATC GAAGATCAGGCTGGTGGTGCTCAGAGGCCGTTAGTAGTACCGATTCTGAATGTCAATGTGACGAGTAATAGCTTGGAGATTCGATTTTATTATGCTGGCA AAGGAACAACAAGGATTCCTGATAGAGGAGTTTATGGTCCCATCATTTCAGCTATTTCTGTAGTTTCCGACGATAAAGCATGTTCCAAACTCGATGGAGG TGGAGGGAAGAAGGGAACAACTTATGCCATTTTCGGAGTTCTTGGAGCATTCAGCCTTGTGATTGTGATTCTAGGAGCTCTTTGGTGGAAAGGCTATCTA CCCGGAAAATGCGCCAAACGAAAAGGTTTTGATGAAGACGACTTGCCTAAGGGTACATTCACGTTGAAGCAAATTCGAGCCGCCACGAATGACTTTGACC ATGCAAACAAGATTGGAGAAGGCGGTTTCGGTCCAGTATATAAGGGTGTGTTACCTGATGGTACATTGATAGCAGTGAAGCAACTTTCGTCGAAATCGAG ACAAGGTAACCGGGAGTTCTTGAACGAGATAGGCATGATTTCCTGTCTGAGACACCCGAATCTCGTCAAGTTGCATGGATTTTGTGTTGAAGGGGATCAA TTGTTGGTGGTGTATGAATACATGGTGAACAATAGCCTCGCTCGAGTTCTGTTTGGCAGGGAGAACTGTGAGCTGAAGCTAGACTGGCCTACAAGGTTCA AGATATGCGTTGGGATAGCGAAAGGTCTGGCCTTTCTTCACGAAGAATCGGTAATCAAGATTGTCCACCGAGACATCAAGGCTACCAATGTCCTTCTCGA CGAAGACTTGAACCCCAAGATATCCGATTTCGGATTGGCTAGGCTTGATGAAGAAGAGAAAACCCATGTCAGTACCCGTGTTGCTGGAACGATAGGGTAT ATGGCACCAGAATATGCACTTTGGGGACACCTCTCCTACAAAGCAGACGTCTATAGTTTCGGAGTTCTGATGTTGGAGATCGTTAGTGGCAAGAACAACA ACAATTTCATGCCAAGTAACAACTGCGTTTGCCTATTAGACTGGGCTTGCCATTTGCAGCAGAACGGGAATCTGCTACCGATCATAGACGAGACATTGAG ATCGGATGTGAAGAAAGACGAGGCTGAGATCATGATCAAGGTTGGTCTATTGTGTACAAACGCAGCATCATCTCTTAGGCCGACAATGTCGGAGGTTGTA AGCATGCTCGAAGGAAGGATTCCTGTTCCCGACACGATACCAGAGCCGAGCAGTTATGCAGAAGACTTGCGGTTGAAGGCATTGCGAGACTTGCGGAAGC ATGGAGAAGGAAACAGCCAGACTCAGAGCCATGGTTTCAGCCAGAACACTACTGCCGACACGTGTAATTCCTCTTTGGATACTACGACTCAAGAATTCTT TGAGATCAAGTCAGCTCCTCACTGA
AA sequence Show only first row Show all	>Lus10015239 pacid=23178726 polypeptide=Lus10015239 locus=Lus10015239.g ID=Lus10015239.BGIv1.0 annot-version=v1.0 MGTKYWQFNADTCDVEEVGMTKVPPRNAEHTIECTCNNGSNTDCHVVRMALKNHNLPGNLPPQLVKLPYLQQVDFAYNYLNGSVPREWSSMQLSSISVLV NRLSGKIPKELGNITTLTYLSLEANQFSGTVPPELGELVNLETLMLSSNQLTGPLPVSFAGLMNLTDFRINDNSLNGRIPNFIQNWKKLTRLEMQGSGLE GPIPPSISQLTNLVELRITDISGPSQGFPELVNATGILRFILRNCSLSGELPDYVWLMKNMEMLDVSFNKLTGKIPTTIPSERLRFVFLTDNLLSGDVPD SILKQGSNIDLSYNNFELQGPGQPACQDNMNLNMNLYRSSSAANNTSRSLPCTNTFTCPRYSNCLHVNSGGKDLTVKENKTTILYEGDSQMLGGTARYFL NEQSYWGISSTGDFMDDNDYQNTRYTVAIQSSSIPELYQTARIAPISLTYFHHCLENGKYTVKLHFAEIVFSNDRTYTSLGKRVFDVYVQGKLEQKDLNI EDQAGGAQRPLVVPILNVNVTSNSLEIRFYYAGKGTTRIPDRGVYGPIISAISVVSDDKACSKLDGGGGKKGTTYAIFGVLGAFSLVIVILGALWWKGYL PGKCAKRKGFDEDDLPKGTFTLKQIRAATNDFDHANKIGEGGFGPVYKGVLPDGTLIAVKQLSSKSRQGNREFLNEIGMISCLRHPNLVKLHGFCVEGDQ LLVVYEYMVNNSLARVLFGRENCELKLDWPTRFKICVGIAKGLAFLHEESVIKIVHRDIKATNVLLDEDLNPKISDFGLARLDEEEKTHVSTRVAGTIGY MAPEYALWGHLSYKADVYSFGVLMLEIVSGKNNNNFMPSNNCVCLLDWACHLQQNGNLLPIIDETLRSDVKKDEAEIMIKVGLLCTNAASSLRPTMSEVV SMLEGRIPVPDTIPEPSSYAEDLRLKALRDLRKHGEGNSQTQSHGFSQNTTADTCNSSLDTTTQEFFEIKSAPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10015239 [exp]	0	1
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	4.1	0.7797
AT2G20320			DENN (AEX-3) domain-containing...		Lus10022854 [exp]	9.5	0.7460
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	11.6	0.7651
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	12.0	0.7567
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	19.7	0.7550
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	20.4	0.7427
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10006616 [exp]	22.6	0.7312
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	28.1	0.7436
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	33.9	0.7332
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	40.9	0.7376

Compare expression of checked genes

Lus10015239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.