Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 385 / 1e-126 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 376 / 1e-123 Major facilitator superfamily protein (.1.2) AT1G33440 366 / 2e-119 Major facilitator superfamily protein (.1) AT1G59740 365 / 5e-119 Major facilitator superfamily protein (.1) AT2G26690 342 / 5e-110 Major facilitator superfamily protein (.1) AT3G54140 337 / 2e-108 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 329 / 3e-105 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 322 / 2e-102 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G12110 318 / 6e-101 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT5G62730 314 / 3e-99 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005417 [exp] 969 / 0 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 402 / 3e-133 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 395 / 1e-130 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10030799 [exp] 381 / 6e-125 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 377 / 7e-124 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 374 / 2e-122 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 374 / 2e-122 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10002793 [exp] 368 / 9e-121 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10032252 [exp] 369 / 2e-120 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064100 [exp] 711 / 0 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 416 / 8e-139 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 411 / 8e-137 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.010G034300 [exp] 386 / 3e-127 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G000800 [exp] 380 / 2e-124 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 379 / 5e-124 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 373 / 1e-121 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 369 / 5e-120 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 362 / 9e-118 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.012G070700 [exp] 341 / 1e-109 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10015240 pacid=23178776 polypeptide=Lus10015240 locus=Lus10015240.g ID=Lus10015240.BGIv1.0 annot-version=v1.0 ATGGAGAAGCCTGGAGTTATTGAAGGGAAAGTTGATTGGAAGGGACGGCCAGCTCAGAAACACAAGCATGGCGGAATCAAGACAGCTTTCTGCATACTAG GCATGTTCGGGATAGCTTGTGAAAACATAGCCACTCTAGCATTGGCGGTGAACTTGGTGACGTACTTCAACAGCGTTATGCACTTGGAAGTGGCAGAAGC AGCGAACCAGCTGACGAATTTCATGGGGGTTAGCAACATCCTCGCGATTCTAGTGGCGATTCTCGCAGATGCTTACATCGGCAGATTCAGAGCTGTTATC CTTTCAGCTTGCCTCGAGATTCTGGGACTAGCTTTGTTAGCGATCCAAGCGCACCACCCGAGTATGAAGCCACCGACTTGCAACGTATTCGACCCAACTG CAACCTGCAAGAAACTCAAAGGAGGAGATGCTGCATATCTCTACACAGCTCTCTACTTGCTTGCAGCTGGATCAGCCGGTTTGAAAGCTTCGTTACCAGC ACATGGTGCTGATCAGTTTGATGAGAAAGATCCACAAGAGGCTAGACAGCGATCTGGGTTCTTCAACTATTTGTTGCTGGCAGTTTGCAGTGGAGGAGCA ATCAGCATAACGTTCATCGTTTGGATCCAGGACCACAAAGGATGGGACTGGGGGTTTGCTATTGGATGTTTAGCCATTGGAGTCGGCTTGCTTGTGTTCT TTACGGGATTGCCTCTGTATAGGATTCAACAAGTTGAAGGATCAACTGCCCTCACTGAGATTATGCAGGTCTATGTTGCAGCTTACAGAAATAGAAAGCT TCAACTTCCAGAAGATCATTCCCAGCTCTATGAGATAAGTAAAGATAAGGAGACATCACTGGAAGTGGAGTTTGTAGCTCACAGAGATGTATTCAGGTGC TTAGATAGAGCAGCAATCCAAACAACAACAGGAGCAGAAGAGCAAGAAGCACCTAATCCATGGAAGCTAAGCAGAGTTACTCAAGTTGAGAACGCCAAGA TCTTTCTAGGGATGCTACCAATCTTCTTCTGCACAATCATCATGACACTATGCCTAGCACAGCTCCAAACATTCTCAATCGAACAAGGTTTAACCATGGA CACATCAATCACCAAATCATTCAAAATCCCGCCAGCTTCCTTACCTATAATCCCAATCGCATTCCTGATCATCCTAGTCCCGATCTACGATCAGCTATGC GTACCTCTGATCCGGAGATTCACCGGCCATCCAAACGGAATCACTCACCTGCAACGAATCGGAGTCGGACTGATCCTCTCCTGCGTGTCGATGGCGGCGG CGTCGATCATGGAAGTGAAACGAAAAGCCGTGGCGAGAGATCACGGGATGCTCGACGCGATTCCTGTGTTGCAGCCGCTCCCGATCAGCGTATTCTGGCT CTCGATCCAGTTCTTCATATTCGGAGTCGCGGACATGTTCACGTACATCGGTCTGTTGGAGTTCTTCTACTCCGAGGCTCCCAGGGCGCTGAAGTCCATG TCGACTTGCTTCCTGTGGATCTCTATGGCGCTCGGTTACTTCCTCAGCACGATCTTGGTGAAGATCGTGAACAGAGCCACGCGGGATAAGACGAGCAGCG GCGGGTGGCTCGCCGGTAACAATATCAATCGGAACCATCTGAATCTGTTCTACCTGTTGCTAGCGGTGTTGAGCTTCGTGAACTTCTGTGTTTACCTCGT CGTCGCCAGGAGGTACGTTTACCGGCCTACGTCTCCTCCGGCGGAAGTTACTCATCCGGTAGCTGTAGCTTCCGATGAGAAGGAGTCGACGGCGAAAGAT CAGGTGTAA
AA sequence Show only first row Show all	>Lus10015240 pacid=23178776 polypeptide=Lus10015240 locus=Lus10015240.g ID=Lus10015240.BGIv1.0 annot-version=v1.0 MEKPGVIEGKVDWKGRPAQKHKHGGIKTAFCILGMFGIACENIATLALAVNLVTYFNSVMHLEVAEAANQLTNFMGVSNILAILVAILADAYIGRFRAVI LSACLEILGLALLAIQAHHPSMKPPTCNVFDPTATCKKLKGGDAAYLYTALYLLAAGSAGLKASLPAHGADQFDEKDPQEARQRSGFFNYLLLAVCSGGA ISITFIVWIQDHKGWDWGFAIGCLAIGVGLLVFFTGLPLYRIQQVEGSTALTEIMQVYVAAYRNRKLQLPEDHSQLYEISKDKETSLEVEFVAHRDVFRC LDRAAIQTTTGAEEQEAPNPWKLSRVTQVENAKIFLGMLPIFFCTIIMTLCLAQLQTFSIEQGLTMDTSITKSFKIPPASLPIIPIAFLIILVPIYDQLC VPLIRRFTGHPNGITHLQRIGVGLILSCVSMAAASIMEVKRKAVARDHGMLDAIPVLQPLPISVFWLSIQFFIFGVADMFTYIGLLEFFYSEAPRALKSM STCFLWISMALGYFLSTILVKIVNRATRDKTSSGGWLAGNNINRNHLNLFYLLLAVLSFVNFCVYLVVARRYVYRPTSPPAEVTHPVAVASDEKESTAKD QV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	0	1
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	2.0	0.8912
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	2.4	0.9315
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	2.8	0.9234
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	4.2	0.8811
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	4.5	0.8822
					Lus10007724 [exp]	6.2	0.8126
AT2G35736			unknown protein		Lus10000732 [exp]	6.6	0.8084
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	6.7	0.8554
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	9.2	0.8923
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	9.5	0.8716

Compare expression of checked genes

Lus10015240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.