Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 330 / 2e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 311 / 4e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 310 / 1e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 286 / 3e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 209 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 206 / 6e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 196 / 4e-60 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 193 / 4e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 195 / 5e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 187 / 1e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002777 [exp] 381 / 3e-132 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 362 / 1e-124 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 338 / 9e-116 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 338 / 1e-115 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 314 / 4e-106 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 295 / 2e-98 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 264 / 5e-87 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10009455 [exp] 199 / 3e-62 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10000893 [exp] 195 / 8e-60 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076500 [exp] 343 / 1e-117 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 339 / 3e-116 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 225 / 2e-71 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 224 / 9e-71 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.018G008100 [exp] 222 / 2e-70 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 216 / 6e-68 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 213 / 8e-67 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 208 / 5e-65 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 208 / 5e-65 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 208 / 6e-65 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10015242 pacid=23178740 polypeptide=Lus10015242 locus=Lus10015242.g ID=Lus10015242.BGIv1.0 annot-version=v1.0 ATGGCTGCATCGAAGCTGAATTCGTGGGCGGTTATGGGTGCGATGATAGCATCGGTGCTAGCTTGTTTCGATATGTTTGCTATCGTCGATGCACAGCCTC AAGTTCCCGGGTACTTCATATTCGGAGACTCGCTCGTCGACAATGGCAATAACAACCGGCTCCAGTCTCTGGCTAGAGCCAATTACATGCCTTATGGGAT CGACTTCCCTGACGGTCCGACCGGTCGGTTCTCCAACGGCAAGACCACCGTCGATGTCATTGGTACGTACACTACAAATCTGAGCAACTGGGGTTCAACT TCATCCCGCCGTACGCTACGGCCAGCGATCGGATTGGGGAGCAACGACTACCTCAACAACTATTTCATGCCGGCGTTCTACAACACCGGCCGGCAGTTCA CCCCCGATCAGTACGCCGATGATCTCATCCGGAGATACACTCAGCAACTCCAGATATTGTACAACAACGGAGCAAGGAAGTTTGTGCTGATCGGAGTTGG GCAGATTGGGTGCAGCCCAAGCCAACTGGCTCAGAACAGTCCCGACGGCAAAACCTGCGTCAAGAGGGTCAACGACGCCAATGTCATCTTCAACAACAAG CTCCGAGCCCTTGTCGACCAGTTCAACGGCAACACCCCAGATTCGAAGTTCATCTACATCAATGCCTACGGCATTTTCCAGGACTTGGTCGACACCCCTG CCGCTTTCGGGTTGACAGTGACGAACCGAGGATGTTGTGGGGTCGGCAGGAACAACGGTCAAATTACATGCCTACCATTCCAGAGTCCGTGTCCAAATAG GAACCAATACTTGTTTTGGGATGCTTTTCACCCGACGGAAATGGCTAATATAGTCGTGGGAAGGAGGTCTTACAGTGCCACTTCTCCCTCTGATGCTTAT CCTTACGACATTCGCCGCCTTGCTCAAGTCTGA
AA sequence Show only first row Show all	>Lus10015242 pacid=23178740 polypeptide=Lus10015242 locus=Lus10015242.g ID=Lus10015242.BGIv1.0 annot-version=v1.0 MAASKLNSWAVMGAMIASVLACFDMFAIVDAQPQVPGYFIFGDSLVDNGNNNRLQSLARANYMPYGIDFPDGPTGRFSNGKTTVDVIGTYTTNLSNWGST SSRRTLRPAIGLGSNDYLNNYFMPAFYNTGRQFTPDQYADDLIRRYTQQLQILYNNGARKFVLIGVGQIGCSPSQLAQNSPDGKTCVKRVNDANVIFNNK LRALVDQFNGNTPDSKFIYINAYGIFQDLVDTPAAFGLTVTNRGCCGVGRNNGQITCLPFQSPCPNRNQYLFWDAFHPTEMANIVVGRRSYSATSPSDAY PYDIRRLAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	1.7	0.9072
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	2.2	0.9145
					Lus10007144 [exp]	2.4	0.8952
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	3.2	0.9111
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	3.6	0.8779
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	4.0	0.9062
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	4.4	0.8390
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	4.6	0.8950
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002192 [exp]	4.7	0.8230
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	6.9	0.8780

Compare expression of checked genes

Lus10015242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.