Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78580 1298 / 0 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G16980 986 / 0 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 947 / 0 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G17000 902 / 0 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT4G17770 424 / 2e-134 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 412 / 1e-129 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G06410 411 / 2e-129 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G23870 404 / 2e-126 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 388 / 1e-120 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 384 / 6e-119 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005412 [exp] 1714 / 0 AT1G78580 1338 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005559 [exp] 1299 / 0 AT1G78580 1507 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10013694 [exp] 1291 / 0 AT1G78580 1501 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10034585 [exp] 425 / 1e-134 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 413 / 4e-130 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10015231 [exp] 403 / 2e-126 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015509 [exp] 402 / 9e-126 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10005425 [exp] 401 / 1e-125 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 401 / 2e-125 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064600 [exp] 1345 / 0 AT1G78580 1305 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.011G103900 [exp] 1312 / 0 AT1G78580 1538 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.001G383600 [exp] 1294 / 0 AT1G78580 1493 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.010G104500 [exp] 432 / 2e-137 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.001G139500 [exp] 428 / 1e-135 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.003G094500 [exp] 426 / 8e-135 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.008G136500 [exp] 418 / 4e-132 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.018G097700 [exp] 404 / 5e-127 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.015G074000 [exp] 399 / 2e-124 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.012G078500 [exp] 392 / 3e-122 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10015243 pacid=23178733 polypeptide=Lus10015243 locus=Lus10015243.g ID=Lus10015243.BGIv1.0 annot-version=v1.0 ATGCCAGGGAACAATTTCAGCCACAGTCCTACGACTCCTAGAACAAGACTAGAGAGGCTACTAAGGGAGAGGGAGCTTCGCAAATCCAGCAGAGTTCCCT TTCCCACTGATCAGGAGAATGGTGATGGTTTCTCCGAAGCGGAATTTTTTGCTCAGGATTCCATTCTGTCTAATGACGAGAGTCCTGAAGGGTCTGATGG AGGTTCAGGGAAAGAGGTGCGCCCTCGTAAACAAAGATTGCTCGTGGTTGCCAACAGGTTGCCGGTGTCTGCTACTCGGAAGGATGAGGATTCATGGCAC CTTGAGATCAGTGTTGGCGGTCTAGTTAGTGCACTTTTGGGTGTGAAAGAGTTTGATGCAAGATGGATTGGTTGGGCTGGTGTACATGTACCTGATGAAA CTGGGCAGAAGGCACTAACTGAAGCATTGGCTAAAAAGAGGTGCATCCCTGTTTTTCTTGATGAAGATACCGTCCACCAGTACTACAATGGCTACTGCAA CAATGTTCTGTGGCCTCTTTTCCATTACCTGGGTCTTCCCCAAGAAGACCGGCTTTCGACTACACGTAGTTTTCAGTCTCAGTTTGATGCTTATAAGAGG GCTAATCGCATGTTTGCTGATGTTGTGAATGAACATTATGAAGAGGGCGATGTTGTTTGGTGCCACGATTACCATCTCATGTTTCTCCCCAAGTGTCTGA AGGAACACAACAGCAAAATGAAGGTTGGTTGGTTCCTCCACACGCCCTTTCCTTCGTCAGAAATACACAGGATGCTTCCGTCTCGATCTGAGTTGTTGAG ATCTGTTCTAGCAGCTGATTTAGTTGGGTTCCATACATACGATTACGCCAGGCATTTTGTGAGTGCCTGTACCCGTATCTTGGGACTTGAAGGGACACCT GAAGGAGTAGAAGATCAGGGTAGACTCACTCGGGTTGCAGCGTTCCCTATTGGGATAGATTCGGATAGATTCATCAGGGCCCTTGACCTTCCCAAAGTCA AGGAAAGTATGAGAGATTTGAAACAGAGATTTGCTGGGAGAAAGTTAATGTTAGGTGTCGATCGTCTTGATATGATCAAAGGGATACCCCAAAAGATTTT GGCATTTGAAGCTTTTCTTGAGGAGAATCCACAATGGCGCGAAAAAGTAGTTCTTCTGCAAATTGCTGTACCTACACGGACGGATGTTCCCGAGTATCAA AAACTCACAAGCCAAGTTCATGAGATTGTTGGACGCATTAATGGAAAATTCGGGACCCTTACTAGTGTTCCGATTCACCATCTGGATCGATCACTTGACT TTACGGCACTTGTTGCACTCTATGCTGTTACTGATGTGGCACTTGTTACATCATTACGAGATGGGATGAATCTTGTCAGCTATGAGTTCGTTGCCTGCCA AGCTGCCAAGAAAGGGGTTCTTATTTTGAGTGAGTTTGCAGGAGCAGCACAGTCACTTGGTGCTGGTGCCCTTTTGGTTAACCCCTGGAATATCTCAGAC GTGGCTAATTCAATTAGGTATGCTCTGAACATGTCAGAAGATGAAAGAGAGAAAAGATTCCACCACAACTTCATGCATGTCACGACACATACCTCACAAG AGTGGGCTGCAACCTTCGTCAGTGAACTTAACGACACTGTGGTTGAAGCCCAACTAAGAACAAGACAAGTCCTCCCTGTCCTTCCAGTCGAAGATGCAAT TGCCCGCTACTCCTGTTCAAACAATCGCCTGCTTATACTGGGTTTTAATGGAAGTCTTACTGAACCGGTAGATAGTTCAGGAAGAAGGGGTGGTCAAATC CGAGAACTGGAACCTAGACTGCACCCTGAGTTGAAAGAAATTCTCAAGAAGCTCTGCGAACACCCTGAGTTGAAAGAAATCCTCAAGAAGCTGTGTGATG AGGCAAAGACCACTGTAATTGTCCTCAGCGGAAGTGACCGATCAGTGCTTGATGATAACTTCGATGAGTACAAAATGTGGTTAGCAGCGGAGAATGGAAT GTTCTTACGCCTTGCCATGGGAGGAGAATGGATGACAACCATGCCCGAAACGCTAAACATGGACTGGGTTGACAGCGTGAAGCATGTGTTCGAGTATTTT ACCGAAAGAACTCCTCGATCCCATTTCGAGCTCCGCGAAACTTCACTAGTATGGAACTACAAGTACGCAGATGTTGCGTTTGGAAGGTTACAAGCAAGAG ACATGCTGCAGCATCTATGGACTGGACCAATCTCAAATGCTTCCCTTGATGTTGTCCATGGTGGCCGATCCGTTGAAGTTCGAGCCGTCGGAGTCACCAA GGGAGCAGCTATCGATCGGATTCTGGGTGAAATAGTGCATAACAAAGACATGAAGGCACCTATTGATTACGTCCTCTGCATCGGCCATTTCCTCGCCAAG GATGAAGACATATACACATTTTTCGAGCCAGTACTGCCAATGCCGCCACAGATAACATCAAGAGCCACATCCCCTGATCCCTACGGTACCAGCAGAGCAT CGAAACCCAAGCTGCCAGGAGGATCAAGAGCACCGAAATCACAAGTTCATCTGATGAAGCAACGATCATTGTCGACTCTGGAGCGCAGCAGTTTCGGTAT CTCGAGTTGGAGACGAGACGACAATCGAGGCGGCCCATCACCGTCATCTTCAGCCACCGCGGCTACGTCGTCTTCTTCTTCGTCTAGGTATGAAGGGTCG TCAGTTTTGGACCTGAAGGGAGACAACTACTTCTCATGTGCCGTCTCCAAGAAGAGGTCTAATGCCAGGTATCTGCTACGGTCGTCAAACGACGTCGTGG TGTTGCTCAAGGAGCTTTCCGATACGGTGCCGGATGGATGA
AA sequence Show only first row Show all	>Lus10015243 pacid=23178733 polypeptide=Lus10015243 locus=Lus10015243.g ID=Lus10015243.BGIv1.0 annot-version=v1.0 MPGNNFSHSPTTPRTRLERLLRERELRKSSRVPFPTDQENGDGFSEAEFFAQDSILSNDESPEGSDGGSGKEVRPRKQRLLVVANRLPVSATRKDEDSWH LEISVGGLVSALLGVKEFDARWIGWAGVHVPDETGQKALTEALAKKRCIPVFLDEDTVHQYYNGYCNNVLWPLFHYLGLPQEDRLSTTRSFQSQFDAYKR ANRMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRMLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTP EGVEDQGRLTRVAAFPIGIDSDRFIRALDLPKVKESMRDLKQRFAGRKLMLGVDRLDMIKGIPQKILAFEAFLEENPQWREKVVLLQIAVPTRTDVPEYQ KLTSQVHEIVGRINGKFGTLTSVPIHHLDRSLDFTALVALYAVTDVALVTSLRDGMNLVSYEFVACQAAKKGVLILSEFAGAAQSLGAGALLVNPWNISD VANSIRYALNMSEDEREKRFHHNFMHVTTHTSQEWAATFVSELNDTVVEAQLRTRQVLPVLPVEDAIARYSCSNNRLLILGFNGSLTEPVDSSGRRGGQI RELEPRLHPELKEILKKLCEHPELKEILKKLCDEAKTTVIVLSGSDRSVLDDNFDEYKMWLAAENGMFLRLAMGGEWMTTMPETLNMDWVDSVKHVFEYF TERTPRSHFELRETSLVWNYKYADVAFGRLQARDMLQHLWTGPISNASLDVVHGGRSVEVRAVGVTKGAAIDRILGEIVHNKDMKAPIDYVLCIGHFLAK DEDIYTFFEPVLPMPPQITSRATSPDPYGTSRASKPKLPGGSRAPKSQVHLMKQRSLSTLERSSFGISSWRRDDNRGGPSPSSSATAATSSSSSSRYEGS SVLDLKGDNYFSCAVSKKRSNARYLLRSSNDVVVLLKELSDTVPDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	0	1
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	1.0	0.9014
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	3.0	0.7905
					Lus10013299 [exp]	4.0	0.7451
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	6.3	0.8285
					Lus10025017 [exp]	8.8	0.7567
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	9.3	0.8249
AT5G27750			F-box/FBD-like domains contain...		Lus10035326 [exp]	10.5	0.6178
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	10.8	0.8249
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	12.0	0.8249
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	12.2	0.6739

Compare expression of checked genes

Lus10015243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.