Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019772 [exp] 49 / 3e-07 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10012947 [exp] 45 / 2e-06 ND / Lus10040421 [exp] 43 / 2e-05 ND / Lus10029608 [exp] 42 / 3e-05 ND / Lus10025569 [exp] 41 / 0.0001 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10008233 [exp] 39 / 0.0007 ND / Lus10023536 [exp] 37 / 0.0009 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015244 pacid=23178808 polypeptide=Lus10015244 locus=Lus10015244.g ID=Lus10015244.BGIv1.0 annot-version=v1.0 ATGACTCGTGGCCTGATTGCGGAACTTTCAGCAGTGACCATCAATGGAAGCTCTTCTTCTTCGTCGGATGTGAGAATCTTGCTAAGGGAGAAAGTCGATT CGCAATTGAATAAGGCAAGGCACTGCGTCTCTGCTAATGACTTTCTTGTCCTGGCAACTGAACCTTGTCAGAAGACTGCTCTGGAAGACTTAGCCTCAAG CCTGACTGAGGTTAAGGAGGCTTTTTTTGTACGTAGGGCCGAGATTGTGGAACACAGAGATAATGTTGTGCTCGAACTTGAGAAGGCGAACCGAGAGGCT TCCGTGGAACTTGATAAACGGAAGAAGTGTCATTCACAGATGATGGACGTGGTCGAGAAGGGGATACTAGCGGCGGAAATGCAGGCTAAAGTCAGGCTAT GTGAATGGTGGAAACAATGGTGGGACCTAGTTGTAAAGTGA
AA sequence Show only first row Show all	>Lus10015244 pacid=23178808 polypeptide=Lus10015244 locus=Lus10015244.g ID=Lus10015244.BGIv1.0 annot-version=v1.0 MTRGLIAELSAVTINGSSSSSSDVRILLREKVDSQLNKARHCVSANDFLVLATEPCQKTALEDLASSLTEVKEAFFVRRAEIVEHRDNVVLELEKANREA SVELDKRKKCHSQMMDVVEKGILAAEMQAKVRLCEWWKQWWDLVVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015244 [exp]	0	1
					Lus10033479 [exp]	1.0	0.9981
AT1G47790			F-box and associated interacti...		Lus10031533 [exp]	1.4	0.9928
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	3.0	0.9890
					Lus10037567 [exp]	3.5	0.9766
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	4.0	0.9858
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	5.0	0.9785
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10043176 [exp]	6.0	0.9316
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	7.0	0.9448
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	8.8	0.9234
AT5G67620			unknown protein		Lus10019264 [exp]	21.1	0.9156

Compare expression of checked genes

Lus10015244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.