Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14770 270 / 2e-91 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G21460 186 / 1e-58 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 154 / 1e-45 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT4G10850 151 / 8e-45 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G62850 146 / 3e-43 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT1G66770 141 / 7e-41 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT4G15920 137 / 2e-39 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 129 / 2e-36 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G13170 130 / 3e-36 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G40260 127 / 1e-35 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005411 [exp] 422 / 9e-152 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10011990 [exp] 370 / 4e-131 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10002783 [exp] 322 / 1e-110 AT3G14770 226 / 4e-73 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 195 / 8e-62 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 193 / 3e-61 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 163 / 1e-49 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 162 / 5e-49 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10003200 [exp] 159 / 5e-48 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 152 / 2e-45 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355500 [exp] 301 / 9e-104 AT3G14770 231 / 2e-76 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 266 / 2e-90 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 261 / 5e-88 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 191 / 1e-60 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 191 / 1e-60 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 191 / 1e-60 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 190 / 4e-60 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 154 / 4e-46 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 148 / 6e-44 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 145 / 6e-43 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10015245 pacid=23178710 polypeptide=Lus10015245 locus=Lus10015245.g ID=Lus10015245.BGIv1.0 annot-version=v1.0 ATGGCGATGTTCAATGAGCTTTCTTCTGTTTTCTCTGTTTGCAGCGACGCAGCTGGAGTTGCAGGGAATCTATGTGCTTTTGTGTTGTTCGTATCACCAA TGCAAGTATCTCCACACACATTTCCTCTTTTCTTAGTTTCAAGACCAACATTCAGAAGAATCATCAGAAACAAGTCGACAGAACAGTTCTCGGGATTGCC TTACATTTACTCTCTGTTCAACTGTTTAATCTGTTGCTGGTATGGATTGCCCTTCATCTCCCCCAACATCATATTGGTCGCCACGACGAATTCCTTTGGC GCAATCTTCCAGTTCATCTACTTGACCATCTTCATTGCCTATACCGATAAATCCAACAAGCTCAAGATGTCGGCTTTGCTTGGCGCAGTGCTAACCATAT TCGCTGCAATTGCTTATGTGAGCTTGACATTCCTGGATTCTGAAACCAGACAGTTGTTCATTGGGTATCTCAGTGTTTTCTCTCTGATTTCCATGTTTGC TTCCCCACTTTTTATCATTAATCTGGTGATCAAAAGTAGGAGCGTGGAATACATGCCGTTCTTCCTTTCGTTCGCCACCTTCTTGATGAGCCTCTCTTTC TCCGCATATGGATTGCTCAAGGCTGATGTTTTCATTTATGTACCAAATGGGATTGGTACTATTCTGGGAGTGGTTCAGCTGGCACTATACTACTACTACA GCAGCCAATTTGATGATCAGAACACAAGAGAACCTTTTCTAGCAGCATATGCATGA
AA sequence Show only first row Show all	>Lus10015245 pacid=23178710 polypeptide=Lus10015245 locus=Lus10015245.g ID=Lus10015245.BGIv1.0 annot-version=v1.0 MAMFNELSSVFSVCSDAAGVAGNLCAFVLFVSPMQVSPHTFPLFLVSRPTFRRIIRNKSTEQFSGLPYIYSLFNCLICCWYGLPFISPNIILVATTNSFG AIFQFIYLTIFIAYTDKSNKLKMSALLGAVLTIFAAIAYVSLTFLDSETRQLFIGYLSVFSLISMFASPLFIINLVIKSRSVEYMPFFLSFATFLMSLSF SAYGLLKADVFIYVPNGIGTILGVVQLALYYYYSSQFDDQNTREPFLAAYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10015245 [exp]	0	1
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	9.9	0.8773
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	13.3	0.8676
AT4G16580			Protein phosphatase 2C family ...		Lus10014413 [exp]	15.1	0.8471
AT3G23450			unknown protein		Lus10023749 [exp]	16.9	0.7791
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	21.4	0.8510
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	22.4	0.8706
AT3G50685			unknown protein		Lus10014321 [exp]	27.9	0.8134
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	29.1	0.8380
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	32.3	0.8479
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	38.4	0.8320

Compare expression of checked genes

Lus10015245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.