Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47915 45 / 3e-06 F-box family protein (.1) AT3G12840 43 / 3e-05 unknown protein AT3G60710 45 / 4e-05 F-box family protein (.1) AT5G44960 45 / 6e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G64540 45 / 8e-05 F-box/FBD-like domains containing protein (.1) AT5G22610 44 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G48400 44 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00315 43 / 0.0003 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56430 42 / 0.0004 F-box/FBD-like domains containing protein (.1) AT5G56810 42 / 0.0004 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027019 [exp] 139 / 7e-39 AT5G22610 53 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025560 [exp] 139 / 1e-38 AT5G22610 53 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025561 [exp] 135 / 3e-37 AT3G49150 52 / 2e-07 F-box/RNI-like superfamily protein (.1) Lus10021833 [exp] 124 / 6e-33 AT3G42770 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027020 [exp] 78 / 2e-16 AT1G51370 58 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10034559 [exp] 66 / 2e-13 AT3G59000 53 / 8e-10 F-box/RNI-like superfamily protein (.1.2) Lus10006346 [exp] 48 / 1e-05 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10006342 [exp] 47 / 2e-05 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10035151 [exp] 45 / 6e-05 AT5G51170 306 / 7e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 47 / 1e-05 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.014G163866 [exp] 45 / 4e-05 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.010G134200 [exp] 44 / 0.0001 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 44 / 0.0002 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.008G050800 [exp] 42 / 0.0004 AT2G39490 264 / 1e-84 F-box family protein (.1) Potri.002G132400 [exp] 42 / 0.0006 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 42 / 0.0008 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015246 pacid=23178713 polypeptide=Lus10015246 locus=Lus10015246.g ID=Lus10015246.BGIv1.0 annot-version=v1.0 ATGAGAATGGAGGACGATCCGTACTTCGGGAAATTGCCGGAGGAGCTACTGGGGAAGATAGCCACCGTGCTGCCCCTACAAGAGGGGGCCAGGACTAGCA TTCTCTCCCGTAGATGGCGGAGTCAGTGGAAGTCGGCGTTGCTGAACAGCCACCACTTTGTCGGCATCAGCATCATCAAATTCATGCCCTGTGGCTATCC AATCTCGTGCTTCGAAACAGTGGATGAATTCATGATCTGGGCTGACCGGGTTATCCGCAGGCGAGAGCCCTTCCCTCCCCGCCCCTGGTTTACCACCCGG CAGCGGTTCTACAAGACCGAATTCTCGTTCAACTCTCTGGGGCTGAATTTCAAACCGGATGAGGAGGAGGAGGATGCCCATCATGGATGGGTCGATTTCA ACAACACCAGATGCAAAAGAAGAGCGCCTTTGCTGGGTGGCGCTTGCACCTGCTGCCGCTCCAAAGTCGTCTCTTTTCTAGGCAGTCCACAGAGGACGAC CATCTCCCTGAGCAATCTCTTCTCGAAGGCAAGGCAGGAGCTTCTTAAACACTTGACCCTGCGGAACTGCGACATGGAAATCCTCAGGAGCCAACTCACA TGCAAAGGCCAAAGTTTTGATTCTCTGAAAACCCTGGTGGTGCAGAAGGGGCAATTGATTGAGGGGAAATTCCTGAGCATATTCATCCATGGTTGCCAGA GTCTCAATATAGTGACTTTGGAAGACTGCAGCATTGTCGACAATTATGGCGATTATCTAGACCCCTGCTCCGGTGGCCGGCTGTACATGAGGAGCCTATG TTTGCAGTTTCTGAGATTGATTAGATGCAGTGGCTTCACAGAGGTTGTGCACGAGTATGCAGACAAGGTGGTGTATGATTATCCGCCGTCAATCCGCCAC CAGACTGTAGAGTTCGAGTTTTTCAATATATGTTATGGTGGACCGCGACCCATACCCCAAGAAGAACCTGAACTGGAACCAGAACTGATTCATGAGACGA ATGCCTTGGGGTTGGAAACAGAGGATGGCAATGAAGATGAGAGTAATGAGGAGGAGGAGGCGGATGAAGTTGCCTACAAGTATTATGATCGATTTGATCG CTATTAG
AA sequence Show only first row Show all	>Lus10015246 pacid=23178713 polypeptide=Lus10015246 locus=Lus10015246.g ID=Lus10015246.BGIv1.0 annot-version=v1.0 MRMEDDPYFGKLPEELLGKIATVLPLQEGARTSILSRRWRSQWKSALLNSHHFVGISIIKFMPCGYPISCFETVDEFMIWADRVIRRREPFPPRPWFTTR QRFYKTEFSFNSLGLNFKPDEEEEDAHHGWVDFNNTRCKRRAPLLGGACTCCRSKVVSFLGSPQRTTISLSNLFSKARQELLKHLTLRNCDMEILRSQLT CKGQSFDSLKTLVVQKGQLIEGKFLSIFIHGCQSLNIVTLEDCSIVDNYGDYLDPCSGGRLYMRSLCLQFLRLIRCSGFTEVVHEYADKVVYDYPPSIRH QTVEFEFFNICYGGPRPIPQEEPELEPELIHETNALGLETEDGNEDESNEEEEADEVAYKYYDRFDRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	0	1
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	1.0	0.9579
					Lus10017698 [exp]	2.0	0.9402
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	2.4	0.9395
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006160 [exp]	2.8	0.8791
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	4.6	0.8645
					Lus10024480 [exp]	4.9	0.8630
					Lus10004769 [exp]	6.0	0.8623
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	6.7	0.8679
					Lus10013650 [exp]	6.9	0.8673
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	6.9	0.8472

Compare expression of checked genes

Lus10015246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.