Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 51 / 2e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 47 / 5e-06 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31680 43 / 0.0001 B3 REM8 Transcriptional factor B3 family protein (.1) AT3G18990 41 / 0.0003 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G31650 41 / 0.0004 B3 REM6 Transcriptional factor B3 family protein (.1) AT1G49480 40 / 0.0006 B3 REM19, RTV1 related to vernalization1 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015266 [exp] 310 / 2e-97 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10039303 [exp] 102 / 1e-24 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025388 [exp] 67 / 3e-13 AT4G33280 70 / 8e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10022473 [exp] 56 / 7e-09 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 52 / 8e-08 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 52 / 1e-07 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 50 / 4e-07 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 50 / 4e-07 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 50 / 4e-07 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 80 / 4e-17 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 57 / 2e-09 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 50 / 2e-07 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 50 / 4e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 47 / 5e-06 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 44 / 6e-05 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 42 / 0.0002 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10015248 pacid=23178799 polypeptide=Lus10015248 locus=Lus10015248.g ID=Lus10015248.BGIv1.0 annot-version=v1.0 ATGAATCGAAACCGAAGAAAGCAGCAGTCTTTAAAGCCACAACTTGGGGGTGCATTTGCACGAGACAACGGTTTGAAAATTGGCGATGTTTGTGCATTCG AGGTTCCGAGAAAAGGCGAAACTGAGAAGCCTACCTTGAATGTGGTCATCTTCCGTGCTGACCAAGGTGTTGACCGAGATGTGCACCCTCCTGTTGATAT TCAACCGAAATCCGCCGTACTACTCTCGGACCGTGAAGGCGCTGAGGCCTGCTCGTCACATGGATTTCGAAATGTACCTAATGAAGCGAAGCTCACCATA GACAAACGGTCTCTTACAGTTAAGCCCTGTGATAAGGATAGATCAGGAAATCTGAGGAAGCAATCGAACCGCATCCTTCAATCGCATGGTGGTTTAGAAG CTGCAAATGCCTTCACCTCAGACTTACCCTTGTTCAAAGTAGTCATGTCACGTGCTTATCTATCCAAGAGCTTCGTGACGATACCAGTGGAGTTCCATAA GCATATCAACGAGGACAAAGCAGAGTTGTGGGTTGAAGGCTTACGCTGGGGAGTGAAAATTGCCAACTATACTGTGAGTGGGTATGCTAGGAAGATCATC TCTACTGGATGGAAGAGTTTTGCTAATGCAAATTCTCTGAAAAGAGGTGATGCCTGTATTTTCGAGTCTCTTTAA
AA sequence Show only first row Show all	>Lus10015248 pacid=23178799 polypeptide=Lus10015248 locus=Lus10015248.g ID=Lus10015248.BGIv1.0 annot-version=v1.0 MNRNRRKQQSLKPQLGGAFARDNGLKIGDVCAFEVPRKGETEKPTLNVVIFRADQGVDRDVHPPVDIQPKSAVLLSDREGAEACSSHGFRNVPNEAKLTI DKRSLTVKPCDKDRSGNLRKQSNRILQSHGGLEAANAFTSDLPLFKVVMSRAYLSKSFVTIPVEFHKHINEDKAELWVEGLRWGVKIANYTVSGYARKII STGWKSFANANSLKRGDACIFESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10015248 [exp]	0	1

Compare expression of checked genes

Lus10015248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.