Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 137 / 5e-37 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025387 [exp] 266 / 4e-82 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 259 / 3e-79 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 250 / 1e-77 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 149 / 3e-41 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 145 / 2e-39 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10007741 [exp] 69 / 3e-13 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 66 / 3e-12 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 144 / 3e-39 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 70 / 2e-13 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.008G119400 [exp] 40 / 0.001 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015250 pacid=23178727 polypeptide=Lus10015250 locus=Lus10015250.g ID=Lus10015250.BGIv1.0 annot-version=v1.0 ATGTTAATTAAATCATTGATAAGCTTATTCGAAATTGAGTTTGATCACTTCCTTGATGTTGATGTGGTTACTCTTTCCCTAGTGGTGTCTGATGATGAAC AACTCTATGTGGGTACTCGTGGATGCATGCTTCCATTTGGATTATGCGTTGATGTGAATTGCAACGACAAAGGATGGTGGGAAGGGGTGGTTTTGGACTA CGAAGATGGTTCGAACCAGAGGAAGGTTTTCTTCCCTGACATTGGCAACGAGATTGTGGTTTCGGTTGGCGAGCTGAGGATCACTCAGGACTGGGACGAA GTATCAGGGAAGTGGAACCATCGAGGGATGTGGCTGTTTCTTGATCTAATCGAGGAGTATAGAGGGAAAGGTGGTCGGATTCCGGTCTCTATCAAGCAAC TATGGTATGACTTGCGCCACAAGAAAGGGTTTCGGAACATTGGAGGAGGAGATTGGACTTGCTCTTCAAGACCTGTATGGGAAGACCTAGATTCCAATTT ATATCACCAGACGGAAAGTGTTATTACTCACTCAAACAGGAGCTCAACTGGACAGCACCGTAACAAATTTAACAAAAAGGATCTGGAGTTTCAGAATGTG TCATTATTACAAGATTCAACAAAACTTCGCTCCTCCCTTCGAGCACATCATCCAAATGAACAGAAACTGAATTTGGACTTCGAGTATTTAGCTGCAAAAC AGACAAAATCACAAGACAAACATCAATGA
AA sequence Show only first row Show all	>Lus10015250 pacid=23178727 polypeptide=Lus10015250 locus=Lus10015250.g ID=Lus10015250.BGIv1.0 annot-version=v1.0 MLIKSLISLFEIEFDHFLDVDVVTLSLVVSDDEQLYVGTRGCMLPFGLCVDVNCNDKGWWEGVVLDYEDGSNQRKVFFPDIGNEIVVSVGELRITQDWDE VSGKWNHRGMWLFLDLIEEYRGKGGRIPVSIKQLWYDLRHKKGFRNIGGGDWTCSSRPVWEDLDSNLYHQTESVITHSNRSSTGQHRNKFNKKDLEFQNV SLLQDSTKLRSSLRAHHPNEQKLNLDFEYLAAKQTKSQDKHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10015250 [exp]	0	1
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	7.0	0.7825
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10026455 [exp]	9.5	0.7470
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	11.9	0.7703
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	14.6	0.7703
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	16.9	0.7703
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	18.8	0.7703
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	20.6	0.7703
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	22.6	0.7561
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	23.8	0.7559
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	31.6	0.7304

Compare expression of checked genes

Lus10015250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.