Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 351 / 3e-120 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 345 / 1e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 344 / 2e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 343 / 5e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 328 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 251 / 6e-81 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 228 / 6e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 227 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 214 / 4e-66 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 211 / 1e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011980 [exp] 484 / 1e-172 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 481 / 4e-171 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 452 / 5e-160 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 391 / 2e-135 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 369 / 3e-127 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 352 / 5e-120 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011985 [exp] 352 / 6e-120 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10025369 [exp] 318 / 5e-107 AT1G17010 187 / 4e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030995 [exp] 306 / 3e-102 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 407 / 3e-142 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 403 / 2e-140 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 385 / 1e-133 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 362 / 3e-124 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 301 / 1e-100 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 276 / 7e-91 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 262 / 4e-85 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 260 / 3e-84 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 249 / 3e-80 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 230 / 1e-72 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10015252 pacid=23178804 polypeptide=Lus10015252 locus=Lus10015252.g ID=Lus10015252.BGIv1.0 annot-version=v1.0 ATGAATCAAGAAGAAGCCGAGTTGACTGAATTTGGGAGCTCTCTCCCAGTCCCTAGTGTCCAAGAAATGGTGAAGGATCCTTCCTTCGCCGGCTCCGGCA CCGTGCCTGACCGTTACATCCGGCCAGATCAGGACCCTCCCTCCGCCGCCACTTCCGCCGTCGAAGTGCCCATCATTGACATGGAGAAGCTGATGGATTT GTCTGATGATGAAGAGCTTGATAGGCTCCATCAAGCTTGCAAAGATTGGGGCTTTTTCCAATTGGTGAATCATGGAGTGAGCAGAGTGCTGGTGGAGAGA GTGAAGAGAGAAGCGACAGATCTGTTCAACTTACCGGCAGAAGAGAAGGAGAAGTACGGTCAGAGAGCCGGCGAGCTCGAAGGTTTCGGGCAAGCATTCG TATTGTCCGAGGAGCAAAAGCTCGACTGGGGAGACATGTTCCATGTCACTAGCCACCCCAAACATCTCTGGAAACCTTACTTGTTCCCCTACTTGCCTCT CCCGCTCAGGGATACACTGGATGAGTATTCAGAAGCACTGAAGACACTGGCAATGTCGATCCTGAACCAGCTGGCAAAGGCTTTGGGTATGGACCGAACC GAGATGAACAAATATTTCGAACAAGGGTGGCAGAATCTGCTTATCAACTACTTCCCTCCATGCCCACAACCCGATCTCGTGATGGGTTTGAACTCTCACT CTGATGCAGTCGGGCTCACCATCCTCCTCCAGCTCACAGACGAAAACCCGGGCTTGCAGATCAAGAAACAGGGTCGTTGGGCTCTCGTCGCCCCTCTCCC CGATGCCTTCATCATCAATGTAGGCGACATTCTCGAGATTATAAGCAATGGCGTATACAAGAGCATCGAGCATCGAGCAACTGTCAACTCCAAGAAAGAG CGGATTTCGTTCGCCACTTTCTTGAGCCCCAAGCTAGACGGCGAGCTAGGTCCGGCGCCGAGCCTCATTACTCCAGACGAACCACCCAAGTTCAAGAGGA TTTCCGTGAAGGAATACTTCAGAGGTCGGTTTGGGAAAGAGCTCGATGGGAAATCTTACCTTGATATCATGAGGGTTTGA
AA sequence Show only first row Show all	>Lus10015252 pacid=23178804 polypeptide=Lus10015252 locus=Lus10015252.g ID=Lus10015252.BGIv1.0 annot-version=v1.0 MNQEEAELTEFGSSLPVPSVQEMVKDPSFAGSGTVPDRYIRPDQDPPSAATSAVEVPIIDMEKLMDLSDDEELDRLHQACKDWGFFQLVNHGVSRVLVER VKREATDLFNLPAEEKEKYGQRAGELEGFGQAFVLSEEQKLDWGDMFHVTSHPKHLWKPYLFPYLPLPLRDTLDEYSEALKTLAMSILNQLAKALGMDRT EMNKYFEQGWQNLLINYFPPCPQPDLVMGLNSHSDAVGLTILLQLTDENPGLQIKKQGRWALVAPLPDAFIINVGDILEIISNGVYKSIEHRATVNSKKE RISFATFLSPKLDGELGPAPSLITPDEPPKFKRISVKEYFRGRFGKELDGKSYLDIMRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	2.8	0.9442
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	4.2	0.9157
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	6.6	0.9233
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	7.5	0.9016
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	7.9	0.9285
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	9.1	0.8824
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	10.8	0.9263
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	14.5	0.8987
					Lus10039350 [exp]	18.0	0.8996
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	18.3	0.9126

Compare expression of checked genes

Lus10015252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.