Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18060 503 / 2e-180 SH3 domain-containing protein (.1) AT4G34660 315 / 3e-106 SH3 domain-containing protein (.1.2.3) AT1G31440 199 / 3e-60 SH3 domain-containing protein (.1) AT4G39020 88 / 9e-21 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004584 [exp] 568 / 0 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 563 / 0 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10028783 [exp] 344 / 3e-117 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 341 / 5e-116 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 323 / 7e-109 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 317 / 1e-106 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10033292 [exp] 270 / 6e-88 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 245 / 2e-77 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1) Lus10028785 [exp] 209 / 1e-66 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354700 [exp] 515 / 0 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 512 / 0 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.009G123200 [exp] 330 / 6e-112 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 330 / 6e-112 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G128800 [exp] 294 / 1e-97 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 275 / 3e-90 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10015253 pacid=23178774 polypeptide=Lus10015253 locus=Lus10015253.g ID=Lus10015253.BGIv1.0 annot-version=v1.0 ATGGACGCGTTGAGGAAGCAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAACAGCAGGCGGTGATAAAGCAATTCAGCGCCAGTGGTTACGAAAGCT CCGATTCTGTAGTCATCGACGAGGTTGAGCTGCAGAGGCACCAGCAGCTGGAGAAGCTCTACAGAACAACTCGATCGGGCAGAGAATTTCAGAAAGACAT CGTTAGAGCTGCAGAAGCACTCACTGCGATTGGATACAAACATATTGAAGCAGGAACCAAGTTGGCTGAGGACTGCTGCAGATATGGAACCGAGAATGAT AGTGACACAATGCTAGCTAAAGCTGCAGCTATCTATGGCGATGCTTGTAAGCATGTGGACAAGGAGACGGAGGATTTGAATCGCTTGCTGTCTTTGCAGG TATTGGATCCTCTAAGAGCAATGATTACTGGTGGTCCATTAGAGGATGCCCGACATCTTGCTCAACGTTATAGTCGAATGAGGCAAGAAGCCGAAGCACA GGCTGCTGAGGTGTCCAAGAGGCAAGTACGAGTAAGAGAAGCCCCCATGCCTGAGAACGTTATGAAATTGCAAGCAGCAGAGGCTAAGATGCAGGAGTTA AAGGCTAACATGGCAGTTCTAGGTAAAGAAGCTTCAGCTGCATTGACTGCTGTGGAAGCTCAGCAGCAAAGACTGACATTTCAACGGCTTGTTTCTCTGG TTGAAGGTGAGAAGAATTATCACTTGCGAATCGGTGCTATACTCAGTGAAGTTGAAACCGAGATGGTTTCAGATAAACAACAAAGAGATTCAGCTCCTCC TGTCATTCCAACTACTGTAACTCCATCACAAAACGGCTCATCAGAGAAAACAACCTACTTCTTATCTGAAGCAACACATCCATTTCATGCAGAATCGGAC AAGGAGTTGAGTTTGGCAATCGGTGACTTCATTGTCGTTCGAAAGGTTATGCCAGGAGGGTGGTCGGAAGGAGAATGCAGAGGCAAATCAGGATGGTTCC CGTCAGCATTCGTCGAGAGGCGCCAGAGGATTCCCACTCCCAATTAG
AA sequence Show only first row Show all	>Lus10015253 pacid=23178774 polypeptide=Lus10015253 locus=Lus10015253.g ID=Lus10015253.BGIv1.0 annot-version=v1.0 MDALRKQASKLREQVAKQQQAVIKQFSASGYESSDSVVIDEVELQRHQQLEKLYRTTRSGREFQKDIVRAAEALTAIGYKHIEAGTKLAEDCCRYGTEND SDTMLAKAAAIYGDACKHVDKETEDLNRLLSLQVLDPLRAMITGGPLEDARHLAQRYSRMRQEAEAQAAEVSKRQVRVREAPMPENVMKLQAAEAKMQEL KANMAVLGKEASAALTAVEAQQQRLTFQRLVSLVEGEKNYHLRIGAILSEVETEMVSDKQQRDSAPPVIPTTVTPSQNGSSEKTTYFLSEATHPFHAESD KELSLAIGDFIVVRKVMPGGWSEGECRGKSGWFPSAFVERRQRIPTPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	6.0	0.8729
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	9.4	0.8619
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	9.7	0.8777
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	11.4	0.8537
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	12.2	0.8711
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	13.5	0.8651
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	15.6	0.8851
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	15.7	0.7738
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	16.1	0.8395
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10033609 [exp]	16.4	0.8585

Compare expression of checked genes

Lus10015253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.