Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29530 49 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025373 [exp] 347 / 3e-122 AT1G29530 51 / 1e-07 unknown protein Lus10011974 [exp] 114 / 1e-29 AT1G29530 48 / 2e-06 unknown protein Lus10004585 [exp] 112 / 7e-29 AT1G29530 54 / 3e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077700 [exp] 73 / 9e-15 AT1G29530 50 / 1e-06 unknown protein Potri.001G354600 [exp] 72 / 2e-14 AT1G29530 54 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015254 pacid=23178769 polypeptide=Lus10015254 locus=Lus10015254.g ID=Lus10015254.BGIv1.0 annot-version=v1.0 ATGCCATCAGGCGCAAAGAAGAGGAAAGCTGCTAAGAGAAAGAAGGAACAGCAGGCTCATAACCACCCCGTGGAGAGCAATTACGGTATCCTAATAAATG GAAACAACCCACATGATGGGCAAGGAAATGGTGATAAAAAAGCTGAAGAATGGAGAAGTAGTGATAGCAGTGAGGTGAATTCGCCAGCATCAGACGGGAA CCCTCATCATACATTCGGTGAGAGAAATGGTTCGTCGCTTAATGAACCAGTTTCTGGGGAAAACAAACTCGCAGTCGCAGAGGGAGTAGCTGGAGAAGAA GCAGCTAGAAGCAACAATGGAGTGCAGCAGAATAATACAGTGGAAATGAAGGACGATTTGAAGCCTGCACAGGATGTCAAGAACCAAGATGCTACTGTTG AGTCGAGTTCTCGGGTAGCGGAGAGTGAAATGGGAGCTACTCAAATTGGGAACCCTGAAGTCATTGACATGGATGAAAGTGGATTGAAGGAAAATGAGGT TAAATCGTTGCCCACCTCTTATCTGGCTAATGAACTGCTAGTCCCTTTGGATTCTGGTAAAAATGATAACTTTTTCCCTACACATGATCAGGATGTTGAG GGGGTAGTTTTTAGTACAATTGTAAATGCTGATAAAACATTCACACCATCAGGTGTTAATCAGAATGGCCAGTCTCCTGAATCTCCTGAAAACCAGCCTC TTGTTGCTTCTGCTCCACGTTTAGCTCAACGAACCTCCTGGTTAAGCTGCTGTGGCTTGTTCAGTGACTAG
AA sequence Show only first row Show all	>Lus10015254 pacid=23178769 polypeptide=Lus10015254 locus=Lus10015254.g ID=Lus10015254.BGIv1.0 annot-version=v1.0 MPSGAKKRKAAKRKKEQQAHNHPVESNYGILINGNNPHDGQGNGDKKAEEWRSSDSSEVNSPASDGNPHHTFGERNGSSLNEPVSGENKLAVAEGVAGEE AARSNNGVQQNNTVEMKDDLKPAQDVKNQDATVESSSRVAESEMGATQIGNPEVIDMDESGLKENEVKSLPTSYLANELLVPLDSGKNDNFFPTHDQDVE GVVFSTIVNADKTFTPSGVNQNGQSPESPENQPLVASAPRLAQRTSWLSCCGLFSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29530			unknown protein		Lus10015254 [exp]	0	1
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	1.4	0.8618
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041561 [exp]	1.4	0.8735
AT4G23330			unknown protein		Lus10032266 [exp]	2.2	0.8193
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	6.0	0.8301
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	9.2	0.7847
AT1G29530			unknown protein		Lus10025373 [exp]	11.5	0.8071
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	11.6	0.8550
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	12.0	0.8032
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001751 [exp]	12.6	0.7733
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	14.5	0.7652

Compare expression of checked genes

Lus10015254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.