Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46530 240 / 1e-82 AWPM-19-like family protein (.1) AT1G29520 227 / 2e-77 AWPM-19-like family protein (.1) AT5G18970 145 / 7e-45 AWPM-19-like family protein (.1) AT1G04560 122 / 1e-35 AWPM-19-like family protein (.1) AT4G39925 48 / 4e-08 AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025374 [exp] 317 / 7e-113 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10011973 [exp] 285 / 2e-100 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10004587 [exp] 281 / 1e-98 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10023713 [exp] 110 / 4e-31 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10014456 [exp] 108 / 4e-30 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10001116 [exp] 106 / 1e-29 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10021949 [exp] 91 / 1e-23 AT5G18970 226 / 1e-76 AWPM-19-like family protein (.1) Lus10041238 [exp] 91 / 2e-23 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1) Lus10017578 [exp] 73 / 1e-16 AT1G04560 148 / 1e-45 AWPM-19-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354500 [exp] 249 / 5e-86 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 246 / 6e-85 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.008G200000 [exp] 121 / 2e-35 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Potri.010G064200 [exp] 120 / 6e-35 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.008G200300 [exp] 111 / 9e-32 AT5G18970 186 / 4e-61 AWPM-19-like family protein (.1) Potri.017G113000 [exp] 106 / 1e-29 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [flax] [poplar] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Lus10015255 pacid=23178805 polypeptide=Lus10015255 locus=Lus10015255.g ID=Lus10015255.BGIv1.0 annot-version=v1.0 ATGGCGAATGGCCAAATGAAATCTGTAGCTACATTGCTGTTGGTTCTCAACTTCTGCATGTACGTCATCGTTTTGGGCATTGGAGGGTGGGCCATGAACA GAGCCATTGATCATGGCTTCATCATTGGACCCGGGTTCGAACTACCAGCTCATTTCTCCCCGATTTTCTTCCCTATGGGGAACGCAGCCACCGGATTCTT CGTCACATTCGCTCTGATCGCCGGAGTGGTGGGCGCCGCCTCCTCAATCTCCGGCCTCAGCCACGTCCGCGCATGGAATTCCGATAGCCTCCCCGCTGCA GCCACTGCCGGCACCATCGCCTGGACCCTCACCCTCCTAGCCATGGGTTTCGCTTGCAAGCAGATCGAGATGGAAGTGAGGAACGCCCGTCTGAAGACAA TGGAAGCCTTTCTGATAATCTTGTCTGCAACTCAGCTGCTGTACATTGCAGCCATTCATGGAGCTGTTTCCCTCGGAAGATAG
AA sequence Show only first row Show all	>Lus10015255 pacid=23178805 polypeptide=Lus10015255 locus=Lus10015255.g ID=Lus10015255.BGIv1.0 annot-version=v1.0 MANGQMKSVATLLLVLNFCMYVIVLGIGGWAMNRAIDHGFIIGPGFELPAHFSPIFFPMGNAATGFFVTFALIAGVVGAASSISGLSHVRAWNSDSLPAA ATAGTIAWTLTLLAMGFACKQIEMEVRNARLKTMEAFLIILSATQLLYIAAIHGAVSLGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46530			AWPM-19-like family protein (....		Lus10015255 [exp]	0	1
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	1.0	0.9515
AT5G46530			AWPM-19-like family protein (....		Lus10025374 [exp]	1.4	0.9436
AT4G39810			Polynucleotidyl transferase, r...		Lus10016807 [exp]	3.0	0.8974
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	3.5	0.9171
AT4G21310			Protein of unknown function (D...		Lus10007626 [exp]	4.6	0.9081
AT5G22870			Late embryogenesis abundant (L...		Lus10016161 [exp]	8.5	0.9210
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	11.3	0.8494
AT4G16400			unknown protein		Lus10039068 [exp]	13.2	0.9110
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	13.6	0.9162
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10037544 [exp]	14.0	0.8408

Compare expression of checked genes

Lus10015255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.