Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46460 832 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 507 / 1e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 474 / 2e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 474 / 1e-158 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 467 / 1e-155 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G37170 465 / 2e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G56690 462 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 459 / 7e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 454 / 2e-150 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 452 / 3e-150 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013149 [exp] 496 / 5e-167 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 485 / 3e-162 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 481 / 4e-161 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 472 / 7e-157 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 486 / 8e-157 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 483 / 1e-155 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 461 / 4e-152 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 456 / 5e-152 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 455 / 8e-152 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354400 [exp] 928 / 0 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 506 / 2e-171 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 497 / 6e-167 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 494 / 4e-166 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G006400 [exp] 493 / 4e-166 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 487 / 8e-164 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G081700 [exp] 482 / 5e-162 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 467 / 2e-157 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 470 / 1e-155 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 465 / 8e-155 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015256 pacid=23178819 polypeptide=Lus10015256 locus=Lus10015256.g ID=Lus10015256.BGIv1.0 annot-version=v1.0 ATGGGTTTGACGCACTGGGCAAGGTCGATCACTTCCTCGTCCAAATCACTGATCTCCCATCACTTGCGAACCCAGAGATTAGACCAAGCTCGTGCAGTTT TCGACACCATTCCATCCCCGGACGCTCATTTATCCACCATGATGATCACGGGTTACACTAAAAACGGAAGAATCGAAGATGCCCTGAACCTGTTCAACAA AATGACATACAGGGACGTGATTTCCTGGAACTCAATCGTGCAAGGCTGCTTGGATTGTGGAGATTTGGAAACTGCAGTCAAACTGTTTGACGAAATGCCT GAAAGAAGTATCGTCTCCTGGACGACGATGGTGAATGGATACATGAAGTCTGGGAGAGTGAAAGAGGCAGAGGGACTATTCCGGGACATGCCGGGAAAGG ATGTTGCGGCATGGAACGCCATGCTTGATGGTTATTGTCGAAACGGTAATGTTCGAGGTGCAGTGGAGATGTTTGATTCCATGCCTTGCAAGAATGTTGT TTCCTGGACTTGTTTGATCGGAGGACTTGATCAGGACGGAAAAAGTGATGATGCATTGATTCTGTTCAGGAAGATGGTAAGTTTCGGAGTCGAACCTACT TCGAGCACATTCGCTTCTGTATTGACTGCTTGTGCAAACGCTATGGATTTCAAGTTTGGGATTCAAGTACATGGTAAGCTCATTCGATTAGGGTTTCATT TCGACGAATACATATCAGCTTCCCTTCTTACATTTTATGGGAACTGTAGGGAGATTGAAGAACTTGATAAGGTTTTCTCTGAGATAGTATATAGAAATGT GGTTACATGGACAGCTCTTTTGACAGGCTACTGTTTCAACTCTAGACACGAGAATGCATTGCTGGTTTTCGTTAAAATGATTCAAGAACGTGTTTTCCCG AATCAATCTACCTTCACTAGTGTTCTGAACTCGTGTCGTGGGCTAGACTCACTCGAGAAAGGTAAAGAGATTCACACAGTAGCTGTAAAGCTCGGTCTGG AAACCGATGTGTCTGTTGGAAACTCCTTGTTAGTTATGTACACTGAATGTGGGAATCTGAAAGATTCTGTAGATGTGTTTAGGAGGATAAAGGAGAAGAA TACTGTGTCGTGGAACTCGATAATCGTTGGAAGTGCCCAGCACGGGAATGGGAGCTCGGCATTGGCTTTGTTTACTCGAATGTTACGTGCAGGATTCGAG CCGGATGAGTTTACATTCACGGGTTTGCTTTCTGCTTGTAGCCACTCCGGGATGTTGCAAAAAGGAAGACGCTTGTTCGAGTATATTACTCGGTACAAAT CTTCATCGGTGGAACTGCAACACTATTCGTGTATGGTGGATATCTTAGGGAGATCTGGAAAGCTGGACGAAGCGGAGAATCTGATTCGCATAATGTCCAT CAAACCGAACGCCATGGTATGGCTAGCCTTGTTAAGTGCTTGCAGGGTACATTATAACATCGAGATTGCAGAACGAGCTGCGATCTCGATCTTTGAACTC GACCCACATTGTAGCGCTGCTTATGTTCTCTTATCGAATATCTACGCCTCTGCCGGTAGATGGCCCGATGTTTCGAGGATGAGGGTTCGAATGAGACACG GAGGTGTCACCAAAGAACGGGGTTCGAGTTGGGTGGTTTTGAAAGGGAGGAAACACGAGTTTGTTTCTGGGGATCGGTCATTGAAGAATCCCGTGATGGA GAGGATTGACGAGAAGCTGAGGTGGCTTAGAGGGAAAGTGAAAGAAGCTGGATATGTTGCTGATCAGAGATATGCATTGCATGATGTGGAGGATGAACAG AAGGAGGAAATGCTGTGGTATCATAGCGAGAGGATTGCGATCGGATTCGCGTTGATTAGTACCATGGAAGGGAGTAGGATCACGGTGATGAAGAATCTAA GAGCTTGTGGGGATTGCCATGCTGTTATAAAGCTGATATCCAAGATCGTGGGAAGGGAGATTGTTGTTAGGGATTCTGGGAGGTTTCACCATTTTAAGGA TGGAGTTTGTTCATGCTCAGATTATTGGTAG
AA sequence Show only first row Show all	>Lus10015256 pacid=23178819 polypeptide=Lus10015256 locus=Lus10015256.g ID=Lus10015256.BGIv1.0 annot-version=v1.0 MGLTHWARSITSSSKSLISHHLRTQRLDQARAVFDTIPSPDAHLSTMMITGYTKNGRIEDALNLFNKMTYRDVISWNSIVQGCLDCGDLETAVKLFDEMP ERSIVSWTTMVNGYMKSGRVKEAEGLFRDMPGKDVAAWNAMLDGYCRNGNVRGAVEMFDSMPCKNVVSWTCLIGGLDQDGKSDDALILFRKMVSFGVEPT SSTFASVLTACANAMDFKFGIQVHGKLIRLGFHFDEYISASLLTFYGNCREIEELDKVFSEIVYRNVVTWTALLTGYCFNSRHENALLVFVKMIQERVFP NQSTFTSVLNSCRGLDSLEKGKEIHTVAVKLGLETDVSVGNSLLVMYTECGNLKDSVDVFRRIKEKNTVSWNSIIVGSAQHGNGSSALALFTRMLRAGFE PDEFTFTGLLSACSHSGMLQKGRRLFEYITRYKSSSVELQHYSCMVDILGRSGKLDEAENLIRIMSIKPNAMVWLALLSACRVHYNIEIAERAAISIFEL DPHCSAAYVLLSNIYASAGRWPDVSRMRVRMRHGGVTKERGSSWVVLKGRKHEFVSGDRSLKNPVMERIDEKLRWLRGKVKEAGYVADQRYALHDVEDEQ KEEMLWYHSERIAIGFALISTMEGSRITVMKNLRACGDCHAVIKLISKIVGREIVVRDSGRFHHFKDGVCSCSDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	0	1
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	6.7	0.7621
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	6.8	0.7656
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	8.1	0.7683
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001049 [exp]	9.2	0.7162
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	9.7	0.7161
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	17.0	0.7484
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	21.6	0.6721
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10010902 [exp]	22.4	0.7162
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	24.2	0.7205
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	32.6	0.7215

Compare expression of checked genes

Lus10015256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.