Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46400 570 / 0 ATPRP39-2 ,AT PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04080 384 / 3e-119 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G17760 50 / 9e-06 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025377 [exp] 796 / 0 AT5G46400 392 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024952 [exp] 379 / 8e-117 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022874 [exp] 372 / 2e-114 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257100 [exp] 360 / 7e-110 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.014G192800 [exp] 360 / 1e-109 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.004G229732 [exp] 47 / 0.0001 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015257 pacid=23178714 polypeptide=Lus10015257 locus=Lus10015257.g ID=Lus10015257.BGIv1.0 annot-version=v1.0 ATGGAGGAGATTCCAGCTTCAGACACCGAAGCAGAGTCCCGGAGAATGGATGACACAACCGACGGAGATTCTATTGTGTTTCTAGACGACAGCAAGCTGC TCGAGGTAATTTCTGAAGGCTCATTGAAGTTTGAGGAATGGACTTCTCTTATATCGTTGACGGAGAAGGCGCACCCGGATGACATGGAGAAGATATCGTT AGTTTACAATCCCTTCTTGTCTGCGTATCCTTTGTGCTATGTTTACTGGAGGAAGTACGTCAACCACACGATCAAGCTGTGTACCCCTGAAAAGGCTGTT GAAGTCTTTGAGCGTGCAGTGGAATCAGCTATGTATTGCGTTGATGTTTGGGTTGATTATTGCACTTTTGGCTGTCTGGCCTTTGGTGATCCAGCTGATA CTCGCCGATTGTTCGAAAGAGCCATGTCCTTCGTGGGAAAGGATTATTTATGCCATACTTTGTGGGATAAGTACATAGAATTTGAGTTCTCTCAGCAGCG GTGGGATTCTCTGGCTGAAATTTACATCCAAGCGTTGAGGTTCCCAACCAAAAAGTTGCACAAGTATTATGATAGTTTTAAGAAGTTGGCAGGAGTTTTG AAAGATGAAATGGGAGTCCAGAGCAAGTCCACCTTGGAAGAGCCTGTTGAACCTGTACTTAATGGTGAAGTCTCTACCAGTTATAAGCTAGATAAATTAT CGGGTATCACAAGAGACTTGCTAGATCCATCCTCTGCATCAGTTGGGATTAAAGCTCTGCAGGAGTATATGGCTATTGGAGAGTGTTTCTACCAGAAGTC CTGTCTAGTTACTGAAAAAATAAGTAGCTTTGAGGCTAAAATAGATCGCTCTTATTTTGACGTGAAACCACTTGAAGTCAGTCAGCTAAAAAATTGGCAT CAGTATCTGGATTTTGCGGAGTCACATGAAGATTTTGACTGGGCTCTTAAACTTTACGAGAGGTGCTTAGTTCCTTGTGCCAATTATCCAGAGGTATGGA TACGCTATGTAGAATTCATGGAAAGCAAGGGCGGCAGAGAACTAGCAGACTTTGCTCTGAGTCGAGCAACAAAAACATTTGTGAAGAGTATTTCAGTGAT GCATTTATGCAATGCCTGGTTTAAAGAGCATCTTGGGGATGTGTCAAATGCACGGGCTTCCTTCCTTGACTGCAATGTCGAATCAGACTCGGATTTTGTT GAAAGTGTCATCAGAAAAGCTAACATGGAAAAGCGTCTTATTGCTGATGTTTTGTCAGAATGCCAGGGAAATTTCAAAGCAGCTGCAAGAACTTGTAAGC AAGCTTTAAAAGTGGCTGTGACGATGGGTAAACATGATGTTCTCCCCCTCATATACATACATTTCTCGAGACTTAAATACATGATGGCTGATAGCGAAGA TGCCGCAATCGACATCTTGACAGATGCTATTAAAAAAATTCCAGGAAACAAGTTACTTATAGAGGAATTAATAAAGTTTGCAATGGCACATAAAGGATCT AGGCACATCAACGTAGTCAATTCAATCGTTATTGATGCACTATCTGTCAGCTCAAGCTCATCCAAAGGTCTGAGTACACAGGACGGAGAGGACATATCAA GACTATACTTAGAGTTTGTTGACCTCTGTGGAAATATCCATGATGTGAGGAAGGCATGGACTCGGCATGTAAGATTGTTTCCTCATCTTTTGAGGACTCA TTTCCATGGTGCGAATGGTAGACAATGGAAAATGTGTGTTTCACAAATGATTGAAAAGGATAACTTGCTTCCTCATGATTCTGGAGAGCATTATTCTGTT AACCAAGTTCAGCCTTCCTCTCCTGAAGATAGACCGTTGTCCTTGGAGAATCACAACGAGATGATAGTAGACGGAGATAGCAATCATCAGATAAATGAAA GTATATTATCTGATCAGGTTACAGCTGGCCTTTTGCAATCAGGAGCTACTGACACCACTATGCAAGAGGAAGTGCACGAGACAGATACTGAAGTTCCAAG GGAAGTAAAAGATGATGCTCCTAAACAAGATCTATCTGTTGATTTGGTAAATCAGGGCTCCAGTAAAACTGACAGTGCAGAAGTTCCATCCCAATCGTTG AAAGAAAATGTTGAAAAGCAAGAAAATCCGAGAGATCTGCCTGAAAAGGATTTGAATCAAATTCAGTTGGAGAAACTATCCTTAGAATCACAGCAAACTC AATCTCCAGGTGCAGTTAATGATGACTCTGAAGTGCCAAAAAGAAGTGATTCAATTCTTCCTCCACCTGATGATTACCAAGCCTCTGATATTCACGGTCT CCCATCTAGCCCAGTTAGCACTAGTGCGACTGTAGTTCATGTCGATGGTTGGAATCGTGGTCCATCTTCAGCAGCTGATCATAATAGTGCAACAGATGCA GCAAGGCCCCAGTCAATGTCAGATCGGGGAAATAAAACTGAAAGACATCGTAGCGATTCCAGGTCTGGACATCGTAGCAATTCCAGAACTGGATATCGTG ATCGTTCAAGGAGAAGTCGATGGGGCTCTCCACGCTGGCCGTATGCAGAAGTTGAAAACCCTCAAGATCAGCAAGGTACCCAATTTCTGGCTAGTACTGG TCAAGAACCCCAAACCCAGTCTGCACACAATATGCAGCAACAACAGGTTCCTTTCCTTCCCGGGCAGTCAGATATTGCTCAGCATCAGGAGAACACGCAA AACAATCCGTCATATGAGCAGATGTGGCAGCAGTATTATTACTACTACCAACAACAGTTACTTTGGCTCCAGCAGCAGCTTCAAGACCCACAAAACCAAG AGCCTCAGCAGCTAATGTACCTACAGCAGCAGTACCAGTACCAACTGCAGCAACTGCAGTATCTACAATCGCTCTCACAGCCACAGCAACTTCAGCTTAT GCAACAGTATTATGACCAGATGTATATGCAGCAGTGGTATCAACCGCAGCAACAAACTTACGATCAGCAATTTCAGCAACAGCATCATCAACTCTATTCT TATCAACAGCCGCAGTATCATGAGCAAGGAGAAACTGATCTGCCATGTAACAACACATCACAACAAAAGCCGTTGCCCCAGGTATGCTCTGGAAAAAGAA TCACTTGA
AA sequence Show only first row Show all	>Lus10015257 pacid=23178714 polypeptide=Lus10015257 locus=Lus10015257.g ID=Lus10015257.BGIv1.0 annot-version=v1.0 MEEIPASDTEAESRRMDDTTDGDSIVFLDDSKLLEVISEGSLKFEEWTSLISLTEKAHPDDMEKISLVYNPFLSAYPLCYVYWRKYVNHTIKLCTPEKAV EVFERAVESAMYCVDVWVDYCTFGCLAFGDPADTRRLFERAMSFVGKDYLCHTLWDKYIEFEFSQQRWDSLAEIYIQALRFPTKKLHKYYDSFKKLAGVL KDEMGVQSKSTLEEPVEPVLNGEVSTSYKLDKLSGITRDLLDPSSASVGIKALQEYMAIGECFYQKSCLVTEKISSFEAKIDRSYFDVKPLEVSQLKNWH QYLDFAESHEDFDWALKLYERCLVPCANYPEVWIRYVEFMESKGGRELADFALSRATKTFVKSISVMHLCNAWFKEHLGDVSNARASFLDCNVESDSDFV ESVIRKANMEKRLIADVLSECQGNFKAAARTCKQALKVAVTMGKHDVLPLIYIHFSRLKYMMADSEDAAIDILTDAIKKIPGNKLLIEELIKFAMAHKGS RHINVVNSIVIDALSVSSSSSKGLSTQDGEDISRLYLEFVDLCGNIHDVRKAWTRHVRLFPHLLRTHFHGANGRQWKMCVSQMIEKDNLLPHDSGEHYSV NQVQPSSPEDRPLSLENHNEMIVDGDSNHQINESILSDQVTAGLLQSGATDTTMQEEVHETDTEVPREVKDDAPKQDLSVDLVNQGSSKTDSAEVPSQSL KENVEKQENPRDLPEKDLNQIQLEKLSLESQQTQSPGAVNDDSEVPKRSDSILPPPDDYQASDIHGLPSSPVSTSATVVHVDGWNRGPSSAADHNSATDA ARPQSMSDRGNKTERHRSDSRSGHRSNSRTGYRDRSRRSRWGSPRWPYAEVENPQDQQGTQFLASTGQEPQTQSAHNMQQQQVPFLPGQSDIAQHQENTQ NNPSYEQMWQQYYYYYQQQLLWLQQQLQDPQNQEPQQLMYLQQQYQYQLQQLQYLQSLSQPQQLQLMQQYYDQMYMQQWYQPQQQTYDQQFQQQHHQLYS YQQPQYHEQGETDLPCNNTSQQKPLPQVCSGKRIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	0	1
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	1.7	0.8882
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	3.0	0.9039
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	4.0	0.8876
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	4.9	0.8909
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	6.7	0.8723
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	7.5	0.8480
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	8.1	0.8822
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	8.5	0.8724
AT3G07530			unknown protein		Lus10011289 [exp]	9.8	0.8087
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	9.9	0.8775

Compare expression of checked genes

Lus10015257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.