Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29390 192 / 1e-61 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 190 / 1e-60 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) AT4G37220 60 / 8e-11 Cold acclimation protein WCOR413 family (.1) AT3G50830 59 / 1e-10 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT2G23680 46 / 5e-06 Cold acclimation protein WCOR413 family (.1.2) AT2G15970 42 / 9e-05 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025378 [exp] 393 / 2e-140 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 263 / 7e-89 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10004547 [exp] 239 / 8e-80 AT1G29395 140 / 3e-41 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10021020 [exp] 64 / 5e-12 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10027946 [exp] 58 / 4e-10 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10012034 [exp] 57 / 7e-10 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 57 / 9e-10 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 55 / 4e-09 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 51 / 8e-08 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353500 [exp] 195 / 1e-62 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Potri.007G033801 [exp] 64 / 3e-12 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 58 / 3e-10 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 57 / 9e-10 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 40 / 0.0004 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10015258 pacid=23178815 polypeptide=Lus10015258 locus=Lus10015258.g ID=Lus10015258.BGIv1.0 annot-version=v1.0 ATGAGTATCGGAATCGCTTCGAAACCGCTCAGCTTTTGTCTCCATAGCCGCTTCAGTCTTGCCGAGAACAAGCAGAAACAACGGCTTCTCGCTCTCGACG GCCGGCGTTTCGGCAGCTCTGTTACTCCTCTTCGCGTTTCCAGCTCGCTCAGTTACAATCCTCTCAGTTTCGGAATCAAGAGCAACGACGATGCAGTTTT GAGGAAGAAGCTGGTGGGAGGGAGGATGATCAGTACTGTCTGCGCCGCTCTGCCAGTCAGTACTGCGCGGAACCTACAGTGGATCTCCACTATTGCTTCC ATGGTGCTAATGCTTGCCAAAGGAACAGCTATCAACAAATGCTTTCTCGTTCCATTCCTTGCATTGCAGGCACCTACTGCTGTTATCTCTTGGGTTAAGG GTGAATATGGTGTGTGGGCTGCATTTATGGCACTTCTAGTACGCCTCTTCTTTTTAATTCCTGGTGAACTAGAGTTGCCATTTATGGCTCTGCTCCTGGT AATCTTGGCACCGTATCAGGTTCTGAACCTAAAAGGGACACAGGAAGGTGCCATCATTAGCATAGCGATTGCAGCCTACCTGGCTTTCCAGCATTTTTCA CGAGGAGGCAACATGCAGAGATCATTTGAGCAAGGTTCAATTGTTGCCACCGTAGCTATCATCTGTATTACAGTTGCCTCATTCTTGCTCTTGCTCTAA
AA sequence Show only first row Show all	>Lus10015258 pacid=23178815 polypeptide=Lus10015258 locus=Lus10015258.g ID=Lus10015258.BGIv1.0 annot-version=v1.0 MSIGIASKPLSFCLHSRFSLAENKQKQRLLALDGRRFGSSVTPLRVSSSLSYNPLSFGIKSNDDAVLRKKLVGGRMISTVCAALPVSTARNLQWISTIAS MVLMLAKGTAINKCFLVPFLALQAPTAVISWVKGEYGVWAAFMALLVRLFFLIPGELELPFMALLLVILAPYQVLNLKGTQEGAIISIAIAAYLAFQHFS RGGNMQRSFEQGSIVATVAIICITVASFLLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	1.0	0.9417
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	1.4	0.9360
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	3.0	0.9049
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	4.0	0.8903
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	4.7	0.8823
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	4.9	0.8980
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	5.7	0.8741
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	6.0	0.8735
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	6.9	0.8810
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	7.1	0.8992

Compare expression of checked genes

Lus10015258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.