Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29380 144 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G30933 124 / 2e-34 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G09460 111 / 1e-28 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G05430 103 / 2e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G79480 101 / 2e-24 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT2G05790 101 / 2e-24 O-Glycosyl hydrolases family 17 protein (.1) AT5G35740 95 / 2e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G63225 94 / 5e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 100 / 8e-24 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 98 / 2e-23 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025379 [exp] 314 / 2e-108 AT1G29380 140 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004546 [exp] 254 / 8e-84 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 251 / 6e-83 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 132 / 6e-37 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 131 / 1e-36 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10001516 [exp] 125 / 4e-33 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10031443 [exp] 123 / 2e-32 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10003803 [exp] 111 / 1e-27 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10010478 [exp] 103 / 6e-25 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078500 [exp] 223 / 5e-72 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G353400 [exp] 216 / 2e-69 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 144 / 6e-42 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.005G202400 [exp] 136 / 7e-39 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 134 / 1e-35 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 125 / 2e-32 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.007G111000 [exp] 106 / 3e-28 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 105 / 9e-28 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 103 / 3e-27 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.014G164600 [exp] 101 / 4e-27 AT5G35740 179 / 8e-60 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10015259 pacid=23178798 polypeptide=Lus10015259 locus=Lus10015259.g ID=Lus10015259.BGIv1.0 annot-version=v1.0 ATGGGGTTCCTCCGGCATCTTCAGTCTTTCCTCGTCGTTCTGCTGTATCTGCTCTACATGTCAGGGGCTAGTGTTGCAGAACCACACCCTCTGAAAGCAA TCCCGGACAGCAAACTAATGCAGAATCGTGTTTACCACCGTCAACTGTTCCGATCCTCGTCGATTTCCACAACCCAGCTCGATACAACTACGGGGGATGT TCCCATCGTGAACCTAACAAGTCCCAACGCACTGCCCATTGCGGATCCAATTGACTCCCCCCCAGAACCAAGTACTACAATCCCCACACAGACACCGCCA GCCCCTGTATCAGGAAACCCGCAACCTACAACACCAACAGCATCAGGAAAAGGGCAATGGTGTATAGCAAGTCCGTCTGCTTCAGAAACTGCCTTGCAAG TGGCACTTGATTATGCCTGTGGCTACGGTGCAGACTGCTCATCGATTCAGGCAGGAGCTAGCTGCTATAACCCGAACACACTCCGAGATCATGCATCTTA TGCCTTCAATGCTTACTACCAGAAGAACCCAGCTACCACCAGCTGTGTTTTTGGTGGAACAGCACTACTCACCAGCACAGACCCAAGTAATGGAAACTGC CATTATGCATCATCCAAGAATCAACCCAGCATGAATCCACCACTAACAGATATGGCTCCACCATACCCCGGTGGTGTAGCACAGCCACCAGGTCCCAGCT CTGCCACCTCTGTTTCATCAAACCTATTGATGGTCTGTTCACTAGCAGTCGGAATGCTGGGATCTTTAACCATTACGAAACATCTGTAA
AA sequence Show only first row Show all	>Lus10015259 pacid=23178798 polypeptide=Lus10015259 locus=Lus10015259.g ID=Lus10015259.BGIv1.0 annot-version=v1.0 MGFLRHLQSFLVVLLYLLYMSGASVAEPHPLKAIPDSKLMQNRVYHRQLFRSSSISTTQLDTTTGDVPIVNLTSPNALPIADPIDSPPEPSTTIPTQTPP APVSGNPQPTTPTASGKGQWCIASPSASETALQVALDYACGYGADCSSIQAGASCYNPNTLRDHASYAFNAYYQKNPATTSCVFGGTALLTSTDPSNGNC HYASSKNQPSMNPPLTDMAPPYPGGVAQPPGPSSATSVSSNLLMVCSLAVGMLGSLTITKHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	0	1
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	2.6	0.9455
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	2.8	0.9265
AT2G41200			unknown protein		Lus10008568 [exp]	3.2	0.9252
AT2G36650			unknown protein		Lus10023883 [exp]	3.7	0.9454
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	3.9	0.9363
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	4.6	0.9190
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	6.3	0.9147
AT2G41200			unknown protein		Lus10032687 [exp]	6.9	0.9040
					Lus10000650 [exp]	7.4	0.9138
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	8.2	0.8974

Compare expression of checked genes

Lus10015259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.