Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07610 650 / 0 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G62310 612 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 606 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 588 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 392 / 1e-121 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 243 / 3e-67 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT1G67780 44 / 0.0007 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025380 [exp] 1012 / 0 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 1005 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 777 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 588 / 0 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10004602 [exp] 473 / 4e-159 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 424 / 1e-133 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 424 / 1e-133 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020084 [exp] 371 / 1e-112 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10006741 [exp] 355 / 2e-108 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 866 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 855 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 631 / 0 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 620 / 0 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 444 / 1e-140 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 419 / 2e-130 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.015G012800 [exp] 412 / 4e-123 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G027000 [exp] 376 / 7e-118 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 382 / 6e-117 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.006G257400 [exp] 43 / 0.001 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10015260 pacid=23178728 polypeptide=Lus10015260 locus=Lus10015260.g ID=Lus10015260.BGIv1.0 annot-version=v1.0 ATGGAGAGATCAGTCGATTTCTCCGCCACTGGAGCTAATAACAATGTTGAAGTGAAGGTCGGAGGAGAAGCGATGGAGAGCTTTCTGGCAGTGAAAGTGG ATGACACTGCAATGGAGGAAGTTGCGCCGTCGTTGAATCAGGATCTGGAGAAGAAGAAGGATGAGACAGTTGCAGAAGCTGAAATTGAAGAAGTGATAAC TGAGAAGGCTAAAAGAGGAAGGAAACCTGGCTCGAAAAGGCAGAGGCGGCTAGAGAGTTCGGAGACGGAAAGAGTTATGGCGCGAGCGCCACGCAGTTGC CGAACTCGGAAACTCGTTGAATGTGATGTAGAAACTGAAATTGAAGAAGCGATAACTGAGAAGGCGAAAAGAGGAAGGAAACCTGGCTCGAAAAGGCAGA GGCGGCTAGAGAGTTCGGAGACGGAAAAAGTTATGGCGCGAGCGCCACGCAGTTGCCGAACTCGGAAACTCGTTGAATGCGAGGTTGACGAAACTGAAAT TGAAGAAGCGGTAACTGAGAAGGCTAAACGAGGAAGGAAACGCAAGTATGAGGCCAATCCAGAGTTCAACTGTCATCAGTGCAAGAGGAATGATAAAGGC CCCGTTGTTCGTTGCAAGACATGTGATAGGAAGAAATACTGCCATCTGTGCCTGGATACTTGGTATCCCAAGATGAAGCGTGAGGAAATTGCTGCTAAAT GTCCTTTTTGCCGCAACAACTGTAATTGTAAAGATTGCTTGCGTCAGGATGTCAACATGGAGGGTCTGAAGCCTCAATTGACTGTTCAACTAACTAAAGA AAAGGAAAAACAACATGCTGAATATATGTTGCAAACACTTTTACCTTTCTTGAAGAAAATAGATGATGAGCAATTGATGGAGAGAAAGATTGATGCCAGA ATCCAAGGGATTCCAGTAGAAGCTGTAGATGCAAAAGAATCTGAGTGTTCAGCAAGTGAGCGCTTATATTGTGACATTTGCAAGACTGCTATTTTTGACT ACCACAGGAACTGTTCAAAATGTGAAGTTGATATTTGCCTGATTTGTTGTCGTGAAATCCGTGATAATAATATTCGAGGTAATGTGCCTAGTGTGGTTTG GAAATATGTTAACAGAGGTTTTGGCTACTTACATGGGGCACCTGAAGAGCACCAAAATCCCCCCATTTTATTAACTGCTGGGGCTATTACTCAACCTCAA CCCAAATCTGGTTGGAAAGCAAATGAAGATGGTAGCATTATTTGTGCCTGTGGCTCTGGCATTTTAAAGCTTAGAACTATGATCAATGGTGACTGGGTTT CAAAGTTGGTGGAGATAGCAGAAGGTATTGTTAAAGGACTTGAGGTTGATTTGGCCAGGGTCTCCTCTAAACAATGTGCTTGTTCTAGTGGCAATTTCAA TGTAAAATGTGATAAGTTAATGGAGGCTTCACATCGTAAAGACTCGGATGATAATTATTTGTTCTATCCAAAGGCTAAAAGTTTGACAGGGGATGATTTT GAGCATTTTCGTCACCATTGGATGAAGGCTGAACCTGTAGTGGTCGGCAATGTGCTTGAAACTGGCTCTGGGTTAAGCTGGGAGCCTATGGTTATGTGGC GTGCACTTCGCCAAGTTAAATCCGAGAACCATAATACATTCTTGGATGTGAAGACACTAGATTGTCTGGATTGGTGTGAGGTGGATATTAATGTTCACAA GTTCTTTAAGGGATACTCAGAAGGTGATTTTGATGCTATGGAGTGGCCTAGGATACTGAAGCTAAAAGACTGGCCACCATCTGATCTGTTCTATACACGT TTGCCACGGCATGCGGCTGAGTATACCTGTTGTCTGCCCTTTAAGGAGTTCACCCATCTTGATGAAGGGCCTCTGAATCTTGCAGCCATGCTTCCTAAAA AATCTCTGAAACCAGACATGGGCCCAAAGACATATATAGGATATGGGTTTCCTCATGAGCTTGGTCGTGGGGATTCGGTGACAAAGCTTCACTGTGACAT GTCTGATGCGGTGAATATTTTGGCACACACCCAAGAGATTACCTACTCAAGCGAGCAACTTTCTAAGATAGAAGAGTTGAAGGAACAGCATCTGGAGCAG GACAAAGAAGAGCTGCACAGTGCTGCTGAAGTTATGGAAGGGGTTGTGGAAGCTAAGAACGACAGTGATCAAGTTGAAAGGACCCAGGGTGATGGGGTAT CAAACAGTTTGAATACCAAACGAAAAGTGATCAAACAATCGAAGTTGGACAGAAATCACTCTGTGGAGGGTGGTGCTCAATGGGACATCTTCCGGAGAGA AGATGTTCCCAAACTGGAGGAATATCTTTTCAAACACTTCAAAGAGTTTCGGCACATTCATTGTTCCCCATTGCAGGAGGTGATCAATCCCATACATGAT CAAACCTTCTATCTAACCGAGGAGCATAAAAAGAAGCTGAAGGAAGAATTTGGTATTGAACCATGGACATTCATCCAGAAACTTGGTGATGCCGTCTTCA TTCCTGCTGGCTGTCCTCATCAAGTTAGAAATTTGAAATCGTGCATAAAGGTAGCATCAGACTTTGTCTCACCTGAAAATGTTGGAGAGTGCATTCGTCT GACAGAGGAGTACCGCCTTCTTCCAATGAACCATCCGTCAAAGGAAGATAAGTTGCAGGTAAAAAAGATGTGTCTCCATGCTGCGGATTGGGCAGTTAAT ATTTTACTCAGGAAAGGAAACAAAGTTGGTGATAGAGCGGAAGTGAATGGAGCTAAGGAAGGCATGAAAGGTCGGAAGAAGAGAAGAAAGAACGATTGA
AA sequence Show only first row Show all	>Lus10015260 pacid=23178728 polypeptide=Lus10015260 locus=Lus10015260.g ID=Lus10015260.BGIv1.0 annot-version=v1.0 MERSVDFSATGANNNVEVKVGGEAMESFLAVKVDDTAMEEVAPSLNQDLEKKKDETVAEAEIEEVITEKAKRGRKPGSKRQRRLESSETERVMARAPRSC RTRKLVECDVETEIEEAITEKAKRGRKPGSKRQRRLESSETEKVMARAPRSCRTRKLVECEVDETEIEEAVTEKAKRGRKRKYEANPEFNCHQCKRNDKG PVVRCKTCDRKKYCHLCLDTWYPKMKREEIAAKCPFCRNNCNCKDCLRQDVNMEGLKPQLTVQLTKEKEKQHAEYMLQTLLPFLKKIDDEQLMERKIDAR IQGIPVEAVDAKESECSASERLYCDICKTAIFDYHRNCSKCEVDICLICCREIRDNNIRGNVPSVVWKYVNRGFGYLHGAPEEHQNPPILLTAGAITQPQ PKSGWKANEDGSIICACGSGILKLRTMINGDWVSKLVEIAEGIVKGLEVDLARVSSKQCACSSGNFNVKCDKLMEASHRKDSDDNYLFYPKAKSLTGDDF EHFRHHWMKAEPVVVGNVLETGSGLSWEPMVMWRALRQVKSENHNTFLDVKTLDCLDWCEVDINVHKFFKGYSEGDFDAMEWPRILKLKDWPPSDLFYTR LPRHAAEYTCCLPFKEFTHLDEGPLNLAAMLPKKSLKPDMGPKTYIGYGFPHELGRGDSVTKLHCDMSDAVNILAHTQEITYSSEQLSKIEELKEQHLEQ DKEELHSAAEVMEGVVEAKNDSDQVERTQGDGVSNSLNTKRKVIKQSKLDRNHSVEGGAQWDIFRREDVPKLEEYLFKHFKEFRHIHCSPLQEVINPIHD QTFYLTEEHKKKLKEEFGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVASDFVSPENVGECIRLTEEYRLLPMNHPSKEDKLQVKKMCLHAADWAVN ILLRKGNKVGDRAEVNGAKEGMKGRKKRRKND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	0	1
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	1.4	0.8857
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	2.2	0.8743
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10000256 [exp]	2.4	0.8734
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	4.4	0.8931
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	6.0	0.8630
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	6.5	0.8727
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	9.6	0.8424
AT1G06590			unknown protein		Lus10034176 [exp]	12.0	0.8694
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	14.1	0.8685
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	15.0	0.8420

Compare expression of checked genes

Lus10015260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.