Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29350 456 / 1e-147 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 456 / 2e-147 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 219 / 2e-60 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 65 / 2e-10 Kinase-related protein of unknown function (DUF1296) (.1) AT3G07660 46 / 0.0001 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025382 [exp] 1171 / 0 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 862 / 0 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 847 / 0 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 568 / 0 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 62 / 1e-11 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 65 / 3e-10 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 64 / 3e-10 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 51 / 6e-06 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 50 / 6e-06 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078800 [exp] 767 / 0 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 761 / 0 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 204 / 2e-54 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 93 / 2e-19 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 56 / 1e-07 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 54 / 6e-07 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 50 / 9e-06 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 47 / 6e-05 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10015262 pacid=23178775 polypeptide=Lus10015262 locus=Lus10015262.g ID=Lus10015262.BGIv1.0 annot-version=v1.0 ATGAGCGGGAAAGGAAACCACGGCGGCAAAGTTAGTAATGGAATCTCCGCCATACCTCCGGGCTCCAGGAAGGTAGTCCAGAGCTTGAAAGATATTGTCA ACTGCCCTGAATCGGAGATCTACGCGATGCTCAAGGACTGTGACATGGACCCTAACGAGGCCGTTAATCGCCTCCTCACTCAAGTTATGGTTTTGGCGGG GCTTGTAGTCATGATCATCATCTTAGTTTTCAAATTTCCGTTTCTGTGGACTCCGGAACTCAGTGGCTTCTATGGAACGAAGGATACAACTGATCTGAGG CCCCGTGGGGCTAACAATGTTACACATCGTGGTGCCAGGAGTGGCTCAGACCGATATGGACGTGGTGGATCAAGCCAATTTCGATCTACTGAATCCAGTG TTGTACATGGTAAGCCTGCTTATAGGAAGGAAAATGGAGCCCATGCTTATGCTGGGTCTACCTCCTATGCTTCCGCTACTGCAGGAAACAATGGTGGTCG GCGAACTGAACTTACCAGAGACTCATCAGGTGCTGAAAATAAAGCACCGACTATAAGTGCCGGTGATGACTTTTTTGCACCAGCTCAGCCTCCCTCTGGA GTTCAATCTGCATGGATTGGGAATCCAGGTCAAGTATCAATGGCAGATATTGTGAAAATGGGAAAGCCTCAGAGTAACAAATCTGCATTACCTAACCACA CTGCTAATGATAGGCATGGATGGGCACCTCCTGCACATAATGATATACATTCATCTGAAAATTGTGCTCCGAAGGTGTCAGAAATTCGCAATGAACAAGA AGCTTCTGCAAGTGAGCATCTTTATTCTAATAATGAGTGGCCATCAACTGAGCAGCCATCTGCTGCTAGTATGTCATCTTTCATGGAGCCACCTACAGTT CCTGACGTATATGAAAAGCCATCAACTTTAGTTTCTTTAGATAGAGAAAATGAGCATGTGAGGTCTGAGATAGATGAAGTTCAATCGGAAGAAGATGATC TTGATGAAAGCCCAGTTGGGCCTTCTTCTGTACCTAATATACAAATACAGGAGGACGGCAATGGAGGTTCCTCACTATTAGACAATGATCTCTATGAGAA TATTAACTCCCACGAATCCAACGGACATGCTTTTGAGTGTAATGATGCTGAGGAGGGTTCTTCATCTATGGCTGCAAGTTTGCAGCAATTGAACTTGCAC ACCGATGCTAAAGTTGTACCGCCTGAAGAACATAATCCTGTTGTAATAATTCCTAATCATCTTCAAGTTCATGCGCATGATTGTCCACAACTGAGTTTTG GAAGCTTTGGTTCTGCTGGCATCAGCTCGGGTTTGTCTGGTCCATTTGCATCTCAGTCCTTGTCAAATAACCCGGAAGAGACTTCCAAACCGGTGGAACC CCCTACAGCAGGACACTCTGATGCTAGAGATCCGGAGTATTATGCGGATGACCATCTAAGAAATGTTGCTGAAGATAATTTAGTTCATGGAATTAATATA AACGTTGGGAACTATGATTCCCCTTCTGTCCCTCAACCACAAGTCTTAAAGGAAGAAACACAGGAAGCTACTCAGGGAAATCAATATCCATTCATGTCAT CTACGCCTGGCTATAATTATGATAACAATCAGCATTTGGATGCTGCACTTAGAAGCCAACAGTCAAGCTCTCAGTTACAGAATATTGCTGACTTCTCAAG TGTGATGCAGGCTTATTCAAACTCATTGCCTACTGCATTGCTGGCTTCAAATTTGCCAACTGGGAGGGAGTCTGACCTACCATACTCGTCATTCCCGACG AATCAATCCATGCCTACGAAGTATAACACTACCGCCTCCTCCGTCAATGGTCCAAGCATTTCCATGCCAGAGGCATTGAGAGCGTCCAGCATTTCAACAC CTCAGCCAACACAACAGTCACTTGGTGGCTCCGCTGTGGCAGCCATGGGACACACTCTTCCGCAACACCTCGCTGTCCATCCGTATTCCCAAACTGCCCT TCCTTTGGCCCAGTACGCCAACATGATCGGCTATCCTTTCTTGCCTCAGAGCTACGCTTATATGCCGTCGGCTTTCCAACAGGCGTTTCCGGGAAACAGT ACTTACCACCAGTCTCTGGCAGCTCTTCTCCCTCAGTATAAGAACAGTGTCTCTGTAAGCAGCTTGCCCCAATCTGCTGCTGTCCCATCGGGCTACGGTG GAGCTCCTGCAGGGAGTTCCCCTCATAATCAGCCTGCTGCCCCGGTCGGCAATACTCTTCGATATGAGGATGTGCTGAACTCCCAGTACAAAGATACCAA CCATTTGATGTCTCTCCAACAGAACGAGAATTCGGCAATGTGGCTTCAGGGGCATGGCTCGCGAACCATGTCAGCAGCCCCGACTAACTCGTATTACAAC TTCCAGGGGCAGAACCAGCCACAACAGCAACCGCCCTCAGGGTTTCGTCAAGGTCAACACCAACAACAACAACCATCACAGCAGCATTTCAGTGCTCTTG GGTACCCGAACTACTACCATTCCCAGCCTGGCATGTCACTCGAACATCAGCAACAGCAGAACACAAGGGACGGATCTATGGCCGCCATGCAAGGCCAGGG CGCAAAGCAGCAGACCCAGCAACAGTTATGGCAAAACAGCTACTAA
AA sequence Show only first row Show all	>Lus10015262 pacid=23178775 polypeptide=Lus10015262 locus=Lus10015262.g ID=Lus10015262.BGIv1.0 annot-version=v1.0 MSGKGNHGGKVSNGISAIPPGSRKVVQSLKDIVNCPESEIYAMLKDCDMDPNEAVNRLLTQVMVLAGLVVMIIILVFKFPFLWTPELSGFYGTKDTTDLR PRGANNVTHRGARSGSDRYGRGGSSQFRSTESSVVHGKPAYRKENGAHAYAGSTSYASATAGNNGGRRTELTRDSSGAENKAPTISAGDDFFAPAQPPSG VQSAWIGNPGQVSMADIVKMGKPQSNKSALPNHTANDRHGWAPPAHNDIHSSENCAPKVSEIRNEQEASASEHLYSNNEWPSTEQPSAASMSSFMEPPTV PDVYEKPSTLVSLDRENEHVRSEIDEVQSEEDDLDESPVGPSSVPNIQIQEDGNGGSSLLDNDLYENINSHESNGHAFECNDAEEGSSSMAASLQQLNLH TDAKVVPPEEHNPVVIIPNHLQVHAHDCPQLSFGSFGSAGISSGLSGPFASQSLSNNPEETSKPVEPPTAGHSDARDPEYYADDHLRNVAEDNLVHGINI NVGNYDSPSVPQPQVLKEETQEATQGNQYPFMSSTPGYNYDNNQHLDAALRSQQSSSQLQNIADFSSVMQAYSNSLPTALLASNLPTGRESDLPYSSFPT NQSMPTKYNTTASSVNGPSISMPEALRASSISTPQPTQQSLGGSAVAAMGHTLPQHLAVHPYSQTALPLAQYANMIGYPFLPQSYAYMPSAFQQAFPGNS TYHQSLAALLPQYKNSVSVSSLPQSAAVPSGYGGAPAGSSPHNQPAAPVGNTLRYEDVLNSQYKDTNHLMSLQQNENSAMWLQGHGSRTMSAAPTNSYYN FQGQNQPQQQPPSGFRQGQHQQQQPSQQHFSALGYPNYYHSQPGMSLEHQQQQNTRDGSMAAMQGQGAKQQTQQQLWQNSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29370			Kinase-related protein of unkn...		Lus10015262 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	1.0	0.9347
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	2.6	0.9159
AT4G21520			Transducin/WD40 repeat-like su...		Lus10011253 [exp]	5.5	0.9243
AT4G16180			unknown protein		Lus10037780 [exp]	5.8	0.9265
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10038231 [exp]	9.2	0.8787
AT5G53620			unknown protein		Lus10008846 [exp]	10.0	0.9138
AT4G16180			unknown protein		Lus10017062 [exp]	11.0	0.9157
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	14.0	0.9176
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	15.5	0.9048
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	16.0	0.9078

Compare expression of checked genes

Lus10015262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.