Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29790 440 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G40830 210 / 5e-64 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 206 / 2e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 197 / 1e-58 unknown protein AT4G01240 188 / 8e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025384 [exp] 645 / 0 AT1G29790 501 / 3e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 230 / 1e-71 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 226 / 3e-70 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007588 [exp] 205 / 7e-62 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10024318 [exp] 201 / 1e-60 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010138 [exp] 199 / 4e-59 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034506 [exp] 195 / 5e-58 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 195 / 6e-58 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 192 / 1e-56 AT3G05390 697 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079000 [exp] 528 / 0 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G352700 [exp] 516 / 0 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G231100 [exp] 229 / 4e-71 AT3G05390 287 / 2e-92 unknown protein Potri.004G083800 [exp] 225 / 1e-69 AT3G05390 278 / 3e-89 unknown protein Potri.017G135100 [exp] 220 / 5e-68 AT3G05390 278 / 3e-89 unknown protein Potri.005G236600 [exp] 211 / 1e-64 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 207 / 7e-63 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G165300 [exp] 199 / 4e-59 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 194 / 2e-57 AT3G05390 753 / 0.0 unknown protein Potri.004G116900 [exp] 184 / 1e-53 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015264 pacid=23178718 polypeptide=Lus10015264 locus=Lus10015264.g ID=Lus10015264.BGIv1.0 annot-version=v1.0 ATGGGGTTCACCTTCACTATGAGCTTAAACCTACTCCTCCTACTAGCAATGGTAGCCACAAACCTCCTCTCCCTCTACCACCTCTCATCAAACCTCCAAT CCCAAACTCCACCGCCATCCGCCTCCCACCCAATCCCCGACCACCTCCTTCGTCAGCTCAACACCATACGCGCAGCCATCACCCACCTCACGCGCCACCA ACCTCCTTCTCCCTCCGATTCTTCCTCCTCCAGATCATCAACAATCCCTCCCGATCTCCTCCTCTACGCTCACCTCTCCCCGATCGCCTCCGCCTGCCAC AACCACCCCGACCTCCTCCACAAGTACATGACTTATCAGCCTTACTCCGCCTGTCCTCACGATTCCGATCTCGCTGAATCACTAATCCTCCGTGGCTGCC ACCCGCTTCCTCGCCGTCGATGCTTCGCCAGAACTCCTCAAAAACCTCCTTCCTCCCTCCCCCGCAACCCTTTCCCTTCCAATCTCGTCGATTCGAACGT AATCTGGTCGTCGCCAAAGTACACCTGCCAGTCGTTCTCCTGCCTCGCTAAGGATCCCAACCTAGGATTCGATTTTCTCGGAACCGAGATCTCCAGATTC ATGACCTACAAAACGGAGCTGGATCTCCCGATCCCGCAGCTCATCCAGATCTCGGACCGAGCCGGATCTCCGATCCGACTCGGCCTCGACATTGGGGGAG GCACGGGGACGTTTGCAGCGAGGATGAAGCAGTACAACGTGACGGTGGTGACGACGACGATGAACTTCAACGCGCCGAACAGCGAGGCGGTGGCGATGAG GGGGCTGGTGCCGATCCACGCACCGCTGCAGCAGCGGCTCCCCGTGTTCGACGGGGTGGTGGATCTGGTGCGGTGCGGGAGGGCGGTGAACCGGTGGATA CCGACGGCGACAATGGAGTTCTTACTGTACGATGTGGATAGAGTGCTGAGAGGCGGTGGTTATCTGTGGATTGATCATTTCTTTAGCAAAGGTGTGGATT TGGGGAAGGTTTATGGACCGTTGATCGGGAAATTGGGTTATAAGAAGGTGAAATGGGCGGTGGCGAATAAGACGGATTCCGGCGGATTGAAGAACGGCGA AGTTTACTTGACTGCTCTGCTTCAGAAGCCCGTTTCCCGATCTGGGTTGTAG
AA sequence Show only first row Show all	>Lus10015264 pacid=23178718 polypeptide=Lus10015264 locus=Lus10015264.g ID=Lus10015264.BGIv1.0 annot-version=v1.0 MGFTFTMSLNLLLLLAMVATNLLSLYHLSSNLQSQTPPPSASHPIPDHLLRQLNTIRAAITHLTRHQPPSPSDSSSSRSSTIPPDLLLYAHLSPIASACH NHPDLLHKYMTYQPYSACPHDSDLAESLILRGCHPLPRRRCFARTPQKPPSSLPRNPFPSNLVDSNVIWSSPKYTCQSFSCLAKDPNLGFDFLGTEISRF MTYKTELDLPIPQLIQISDRAGSPIRLGLDIGGGTGTFAARMKQYNVTVVTTTMNFNAPNSEAVAMRGLVPIHAPLQQRLPVFDGVVDLVRCGRAVNRWI PTATMEFLLYDVDRVLRGGGYLWIDHFFSKGVDLGKVYGPLIGKLGYKKVKWAVANKTDSGGLKNGEVYLTALLQKPVSRSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	0	1
AT1G65270			unknown protein		Lus10020224 [exp]	1.4	0.8727
AT2G19270			unknown protein		Lus10015539 [exp]	2.0	0.8586
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	2.4	0.8765
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	7.4	0.8344
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	7.6	0.8171
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	7.7	0.8163
AT1G71780			unknown protein		Lus10016547 [exp]	9.7	0.8549
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	9.8	0.8662
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	11.6	0.8183
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009665 [exp]	11.8	0.8412

Compare expression of checked genes

Lus10015264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.