Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46340 826 / 0 RWA1 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) AT2G34410 824 / 0 RWA3 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) AT1G29890 769 / 0 RWA4 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2) AT3G06550 724 / 0 RWA2 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) AT4G18160 415 / 1e-136 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 394 / 9e-129 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G01840 333 / 1e-105 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT1G02510 201 / 4e-58 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G55630 163 / 7e-44 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT5G46360 127 / 9e-33 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003348 [exp] 911 / 0 AT5G46340 905 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10012523 [exp] 798 / 0 AT5G46340 807 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10017079 [exp] 744 / 0 AT3G06550 859 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Lus10037795 [exp] 720 / 0 AT5G46340 838 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10000367 [exp] 651 / 0 AT1G29890 605 / 0.0 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2) Lus10004611 [exp] 464 / 1e-155 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004538 [exp] 397 / 1e-130 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004525 [exp] 318 / 4e-99 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10001912 [exp] 167 / 2e-45 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352300 [exp] 868 / 0 AT2G34410 880 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) Potri.011G079400 [exp] 858 / 0 AT2G34410 861 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) Potri.008G102300 [exp] 757 / 0 AT3G06550 843 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Potri.010G148500 [exp] 747 / 0 AT3G06550 829 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Potri.001G352500 [exp] 468 / 3e-157 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.011G079100 [exp] 453 / 8e-152 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.014G113700 [exp] 352 / 3e-113 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G187600 [exp] 345 / 1e-110 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G059200 [exp] 271 / 8e-83 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.005G203000 [exp] 261 / 4e-79 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel CL0316 [flax] [poplar] Acyl_transf_3 PF07779 [flax] [poplar] Cas1_AcylT 10 TM Acyl Transferase domain found in Cas1p
Representative CDS sequence Show only first row Show all	>Lus10015265 pacid=23178742 polypeptide=Lus10015265 locus=Lus10015265.g ID=Lus10015265.BGIv1.0 annot-version=v1.0 ATGGACAAAGAGCCGCTCCTCCCGTTTGCGAGCCCCAGATTCCGGCCGCCGCCGCCTCCACCGCCGTTATGCTTCTGCCCCTTACCTGAAAACGACGAAT TCTCTCCACCGACGACCATCCCCATGACTCCCTCCGAGCTCAAGGACCATCTTATCTTTGGCCCCTTCACTCCATCCCCTCACGAATCATCTTCCACTTC CTCCATGGTCGTCGAAGCCCTAACTCTCTCCCAGAGCTCTCCTCGGCCACCAAATCCGGTCTCCACCGCCGATTACGATTACTTCCCGAAATCAAATCTC CACCGCAGCAGAACCGCTCCCGCCATGGCGGGAATCAACGAGATCGCCGGCCACCACCATCACGACAACCCTGCAGCTGAACCGAATCCGCAATTCGGAC AGAAATCAGTCGTCAGTCAGGCGTTCGTCCTCCTGGTATTCTACTTAGCCTTTGGAGTTTTGATTTACTGGTTCTACCGTAAGGATTTCTCGGTCAACGA GACTCACCCTGTCGTTGACGCTTTGTATTTCTGCATTGTTACAATGTGTACAATTGGATATGGAGATATAACTCCGAATAGTACCGCTACGAAGCTCTTC TCGATCCTGTTCGTCCTGGTAGGATTTGGATTCGTTGACATTTTGTTATCTGGAATGGTTAGCTACGTTCTTGATCTGCAAGAGACTTATTTGTTAAGAA ATGCTCAGAGAGTTGGAGGAAGAGAAACTGCAGGTAGGTACATTATCGATGTGAAGAAAGGGAGGATGAGGATAAGGATGAAGGTAGGTTTGGCGTTAGG GGTTGTGTTTCTGTGCATTGGCGTTGGTGTTGGGGTTATGCATTTCATTGAGAGGCTTGGATGGGTCGATTCGTTGTATCTTTCGGTGATGTCGGTTACT ACGGTAGGGTATGGGGATAGGGCGTTTGAGTCGATGCATGGGAGGATATTTGCCTCGATATGGTTGCTTGTGTCGACGCTTGCTGTTGCAAGGGCTTTCC TTTACTTGGCTGAGGCTAGAGTCGATAAAAGGCAGAGGAGGATGGCCAAGTGGGTGCTTGGTCATGATATGACTGTTTCGGAGTTTCTCGCTGCTGATAT CGATCACAACGGTTATGTCAGTCATTCGGATAACAAGCTTGATGACTTGGTAAAGGATGCTGTCAAAGAAGATGAACGGGCAGTGTTGTTGGAAGGAGGT CTTACAAGATCAGTTTCAACGAAGTTTCATGTTTCTTCCATCAAAATAAATTTAGTCAGGTTTGCGACTATGGATAATTATTTCTTGCTGGAGAACAGGG CAACTCTGAGAGCTATGGCTGAATTTGGGGCAGTTTTGGTCTACTTCTATATATGTGATCGCACGAACTTGCTAGGAGATTCGACCAAGACATACAATCG CGACCTTTTCCTCTTTCTCTACATTCTCCTTATTATAGTATCAGCAATGACTTCTTTTAAGAAGCATAGTGACAAGTCAGCATTCTCTGGGAAGTCCATT ATGTACCTGAATAGGCATCAGACTGAGGAATGGAAAGGATGGATGCAGGCCAATTTCTTGATTTCGCAGGTCCTGTTCTTGATGTATCATTACTTCGCCG CAGCAGAGATATACAATGCGATACGCATGTTTATTGCAGCTTATGTTTGGATGACTGGATTTGGAAACTTCTCGTACTATTACATCAGAAAAGATTTTAG TGTAGCACGCTTTGCTCAGATGATGTGGCGGCTCAATTTCTTTGTGTTGTTTACTTGTATCGTCCTTAACAACGACTATATGTTATATTACATCTGCCCA ATGCACACTCTCTTCACTTTGATGGTGTATGGATGTCTGGGTATATTTAACAAGTACAATGAGAATACCTCAGTGATGGCAGTGAAGATTCTTTTCTGTT TTCTTGCCGTAATCTTGATCTGGGAAGTTCCCGGTGTCTTCGCGATCCTCTGGAGTCCTTTGACATTTATGTTAGGGTACACTGATCCTGCAAAGCCAAA TTTACCCAGACTTCATGAGTGGCATTTCAGATCTGGACTCGACCGTTATATATGGATCATTGGAATGATATACGCTTATTATCACCCGACTGTTGAGAAA TGGATGGAGAAATTGGAAGAATCTGAAGCTAGAAAGAAAGTTTCCATCAAGACAGCGATCGTGACGGTTACTGTGTTTGTGGGATATATGTGGTATGAAT ATATTTACAAAATGGACAAGGTAACCTACAACAAGTACCACCCATACACTTCATGGATTCCCATCACTGTATATATTAGCTTGCGGAATTTTACTCACCA GCTTCGGGGTTGCTCATTGACTCTCTTCGCTTGGCTTGGGAAGATAACACTGGAGACCTACATTTCACAGTTCCATATCTGGTTAAGATCAAACATGCCT AACGGACAGCCTAAATGGCTTTTATCATTGATCCCAGAGTATCCAATGCTGAACTTTATGCTCACAACTGCCATTTATGTCCTGGTATCTCATAGGATCT TTGAGTTAACTAATACACTCAAGTCAGTGTTTGTACCAACGAAAGATAACCGGAAGCTATTCAACAATTTCGTTGCTGGAGCTGCAATTGTCTTCTCTTT GTATTGCGTCTCGTTGGTTCTTCTTCAGATCCCTCATTCATCGGTAATCCCTTCGATTTCAACCCTCCATTTATAG
AA sequence Show only first row Show all	>Lus10015265 pacid=23178742 polypeptide=Lus10015265 locus=Lus10015265.g ID=Lus10015265.BGIv1.0 annot-version=v1.0 MDKEPLLPFASPRFRPPPPPPPLCFCPLPENDEFSPPTTIPMTPSELKDHLIFGPFTPSPHESSSTSSMVVEALTLSQSSPRPPNPVSTADYDYFPKSNL HRSRTAPAMAGINEIAGHHHHDNPAAEPNPQFGQKSVVSQAFVLLVFYLAFGVLIYWFYRKDFSVNETHPVVDALYFCIVTMCTIGYGDITPNSTATKLF SILFVLVGFGFVDILLSGMVSYVLDLQETYLLRNAQRVGGRETAGRYIIDVKKGRMRIRMKVGLALGVVFLCIGVGVGVMHFIERLGWVDSLYLSVMSVT TVGYGDRAFESMHGRIFASIWLLVSTLAVARAFLYLAEARVDKRQRRMAKWVLGHDMTVSEFLAADIDHNGYVSHSDNKLDDLVKDAVKEDERAVLLEGG LTRSVSTKFHVSSIKINLVRFATMDNYFLLENRATLRAMAEFGAVLVYFYICDRTNLLGDSTKTYNRDLFLFLYILLIIVSAMTSFKKHSDKSAFSGKSI MYLNRHQTEEWKGWMQANFLISQVLFLMYHYFAAAEIYNAIRMFIAAYVWMTGFGNFSYYYIRKDFSVARFAQMMWRLNFFVLFTCIVLNNDYMLYYICP MHTLFTLMVYGCLGIFNKYNENTSVMAVKILFCFLAVILIWEVPGVFAILWSPLTFMLGYTDPAKPNLPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVEK WMEKLEESEARKKVSIKTAIVTVTVFVGYMWYEYIYKMDKVTYNKYHPYTSWIPITVYISLRNFTHQLRGCSLTLFAWLGKITLETYISQFHIWLRSNMP NGQPKWLLSLIPEYPMLNFMLTTAIYVLVSHRIFELTNTLKSVFVPTKDNRKLFNNFVAGAAIVFSLYCVSLVLLQIPHSSVIPSISTLHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	0	1
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	1.0	0.9914
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	2.0	0.9821
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	2.4	0.9802
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	2.6	0.9727
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	4.0	0.9771
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	4.7	0.9700
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	6.6	0.9513
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	6.7	0.9761
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	7.7	0.9738
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	8.2	0.9637

Compare expression of checked genes

Lus10015265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.