Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 543 / 3e-170 PHD finger transcription factor, putative (.1) AT3G14980 293 / 3e-81 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 280 / 3e-77 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 268 / 4e-73 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT4G14920 253 / 2e-68 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G63900 225 / 1e-62 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G36670 231 / 3e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37520 186 / 7e-48 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 184 / 2e-47 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 162 / 8e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025386 [exp] 1224 / 0 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10025387 [exp] 1210 / 0 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 503 / 8e-161 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 524 / 3e-158 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10025388 [exp] 351 / 2e-110 AT4G33280 70 / 8e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10018681 [exp] 317 / 2e-91 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10015248 [exp] 295 / 3e-91 AT4G33280 50 / 3e-07 AP2/B3-like transcriptional factor family protein (.1) Lus10007741 [exp] 311 / 9e-90 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10015250 [exp] 261 / 5e-79 AT5G58610 137 / 6e-37 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 764 / 0 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 440 / 6e-134 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 286 / 2e-78 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 275 / 6e-75 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 263 / 7e-71 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 253 / 9e-68 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 239 / 4e-67 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.002G051400 [exp] 244 / 4e-65 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.006G083600 [exp] 184 / 4e-47 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 177 / 7e-45 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10015266 pacid=23178730 polypeptide=Lus10015266 locus=Lus10015266.g ID=Lus10015266.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAAAAGGAGCTGGTGGGTGGCCAAAATTGAAAAACCCTCGTTTCTACACGTCCATTCTCAACGACCCAGTTCATGATTCTAAACTGCAAA TCCCAGACACGTTTGTTGCAGAGCATGGATCTAGGCTGTCAAAGAAAAAGAAAGTAGTTCTCAAGCTTCCCAGTGGGGCAGAATGGCTAGTGAAAGTGGC GATAAGCAAAGGGGGTAAAATGTGGTTCGACGAGGGTTGGAGAGAGTTCGCCGAGTTCTACACCATAGCACCTGACCACCTTCTGGCTTTTGAGTACCAT GGACATGGTAATTTCCATGTGTTCATATTCACAGAAATTGTGTACAGGACCCATCTGCAAGAACCAGATGTGCATGTTAAGCTAGAGTATGGAGCTGATT CGTATGCTGAAAGCTTGCCTTTTTCCCCTAAAACAAGGGATAAAACACCGTTGGAATCTCTGCAACCTCCTCCTAGTAAGCTGAGAAGAACAACACTGAA CACTGATCGCCGTTTAGGAGAGTATCTTGGAGATGAGGGTTTGAATCGGGATCTTGGTGGAGCTTCTCAGAAGAGGAAACTGATCAGATTTGCTGGTGAA AAAGAAACTAGCTGTCTTGCTAGAGCTACTGCTGCTTTCAAGTCTGAGAATCCTTTCATCATGAAAGTTATGCAGCCATCATATCTTACCAATGGATCGA AACCGCTGTTTCTGCGATCAAGCTTCTTCTTGGAGAATTTCAAGCATAAAAGTGGAGACATCTTCCTCCACGTACTTGGTGGGAAAACCTGGGAGGTTCA ATACAATGTTTATGTGAAGAAGAAAGCAGCAGTCTTTAAAGCCAAAACTTGGGGTGCATTTGCACGAGACAATGGTTTGAAAATCGGCGACGTTTGTGCA TTCGAGGTTCTGAAAAAAGGCGAAACTGAGAAGCCTACGTTGAATGTGGCCATCTTCCGTGCTGACCAAGGTATTGACCGAGATGTGCACCCTCCTGATG AGTCGAAACTGAAATCCGCCCTACTACTCTCGGACCGTGAAGGCTCTGAGGGCCGCTCGTCTCGTGGATTTCAAAATGCACCTAATGAAGTGAAGCTCAC CATAGGCAATCGGTCTCTTGCAGTTACGTGCGGTGATGAGGATAGATCAGGTAATGGAGTTTTAAACAAAGTAGAAATATTTGTTTTAGCTGGCAATCTC CAATCTCTTACCACATTGTGTATCAATCCATATACAGGAAATTCGAGGAAGCAATCGAACCTCGTTCTTCAATCGTGTGGTGGTTTAGAAGCTGCTAATG CCTTCACCTCAGACTTACCCTTCTTCAAAGTAGTCATGTCACGTGCTCATCTATCCAAGAGCTTCGTGGTGGGTATGATACCAGCGGAGTTCCATAAGCA TGTCAACGAGGCGAAAGCAGAGTTGTGGTTTAAAGGCTTACGCTGGGGTGTGAAAATTGCCAACTATACTGGGGGGAGGAATGCCAGGAAGATCATCTCT ACTGGATGGAAGAGCTTTGTTAATGCAAATACTCTGAAAAATGGTGATGTCTGTATTTTCGAGTCTCTTAAGGGCGAAGCTGATGATGGTGGCAGTAGGA GAATGACTGACATGGTAAGAAGCGAAGATGAAGGGTTTGAAGGCTCATGGCACGAGGGAACTGTAAGTGGACGTAGAAAGATAGGCTCCTCTGCCGAATT CGAAATCGAGCTTGATCACTTCCTTGATGTTGATGTGGTTACTGTTTCCCTAGTGGTGTCTGATGATGAACAACTCTCTAGTACTCGTGGATACATCAGA CCTTTCCCGCCTGAATTCACAACAATAAACGAATACATGCTTCCATTTGGATTATGTGTTGATGTGAATTGCAACGACAAAGGATGGTGGGAAGGGGTGG TTTTCGACTACGAAGATGGTTCGAACCAGAGGAAGGTTTTCTTCCCTGACATTGGCATCGAGATTGTGGTTCCGGTTGGCGAGCTGAGGATCACTCAGGA CTGGGACGAAGTATCGGGGAAGTGGAATCATCGAGGGATGTGGCTGTTTCTTGATCTGATCGAGGAGTATACAGGGAAAGGTGGTCGGATTCCGGTCTCT ATCAAGCAACTTTGGTATGACTTGCGCCACAAGAAAGGGTTTTGGAACATTGGAGGAGGAGATTGGACCTGCTCTTCAAGACCTGTATGGGAAGAGCTTG TTTCGGATGTGGTTCGTTGCAATCTTGAACTCGTCTCCGATCGTCTCTTTAATGAATTAAGCCTTCCGGATGGTGCTCGAAAGCTATCGGAGCTTGCTAA GTCGGTTAATTCGGTAACTGATAATGCTGACTCAGAGTCTATGCTGCAACAACTTATGTTGACTGAGAAGTCAACTCCAGAAAGGGATGAACTTCTTGCT GAAGTAGTACAAATGACCTCACTAAGCGGCGAGATAGTAGAAGCAGTTTCTAGTTCGAGCGTCATGGAAATCGAAAGCTGCGACTTTGATCAAGCTAAAA ACTCAAGCAGCCATGGTAGATCAGACTCTAAGCTGCCACAACCTTTACTGATTGAGAACTCCGTTCCAGAAGGGGATGAAGTTTCTACTTATAGTGCCAT GGAAACTGAAAGATGCGACCTTTTGACTCCATCGCTCCGAAAGAACCAAAAGTTTCGCTGGCTACCTGCAGGGCCAGACATGGTTCAGGAACCGAAATAC TGCCCTGAGGCTATTGTGAAATATGCACAAGGCAGTGGAGAAATGGTTGCAAAGGCTAAGCAGCATCTCTTATATTTGGAATGGAGCATTCAGTATTACA TGGATGAATATAAAAGACCTAGATTCCACTTTATATCACCAGACGGAAAGTGTTATTACTCACTCAAACAGGTTTGTAGGATTCTGGTGAATTCTGAGGA TAAAAAGAATCCTCTGAGCGATTCTCGTTACGAATGCCCTAAAGCTATTGTGGACTGTTACAAGGTATCCTGCGCGGGGGGAGCCAGTAAAAATTCAGAT GTGATCAAGCGTGCGAAGGAGAACCTTAAGGCTATGGGGTGGAGCATAGAGGAGAAGTTGCTTGGCAATGGAAGGCGTGTGAAGGTGTATAAGTCGCCCA GGGGGCAGTCTTACACTTCACTTAGGATGGCTTGCCAAAGCTGTATGAATGAAACTGATACATCAGTTGCTTCTAAGCCTATCAAACTACAGAGGAAGAG TTCTAGACCTAGTGGGGATATTAGAAGAGGCCAAAGAGGAAAAACACATCAAACAGGAGCTCAACCAGACGGCATTGTAAAACTTCGCACCCCCCTTCCG AAATCTGTAAGTAGGAAGACGGCTGAAATTTACAGTAGGTTAGCAGACATGAAGAGGCTTACTCAACCGAAGCATCTACGGTCGAGCAAAAGAGTGAAGC TTACGCCGAAGAAATCATCAGGTGGCGATCCTTTGACAATGGTGTCTTGGTTGATAGATAACAATACCATCTTTCCAAGGGAGAAAGTATATTACAGGAC AAGTAAGGATGGTGATGATGGTGATTCGAAGCCTAAGGGGAGAATAACTCGGGAAGGAATCAAGTGTTTCTGTTGTATGAAGGTTTTCTCTCTTAGTAGC TTTGAACTTCATGTAGGCAATAAGTACTACAGAAACTACCACCATGGACCAAGTTCCAGCTTGTTTCTAGCTGATGGGAGGTCTCTGTCAGATTGTCAAG TGCAGGTAATGCGCCAGGGGAAGGAGATGAGTTTGAAATCCCAACCACTGAAGAGATTGAAGGGTAGACATGAAGGTGAAAACGACGAAGTTTGTTCTGT CTGTCAGTATGGTGGGGAACTAATCTTATGCGATCAGTGTCCTTCCTCTTTCCACGGTGGTTGCCTTGGTATGCAAGATGTTCCGGGCGGAGACTGGTTC TGCCCCTCATGTTGCTGCAGAACTTGCAAGCGAAAGCAAGTTCTCAAAGACAGTGAGAGCTTCTTGGACGAGAGTATTCTTAAATGCACCCAATGCGAGT ACAGTTATCACATTACATGCCTGAAGAAGAATGGAGTAAAGAATAGGTACCTTGGTCATAAAGAAGGAAATTGGTTTTGTGGGAAGAACTGTAAAAGGAT ATTCGCTGACCTCTCTGCGCATTTGAGAATACCGATTCCAACTGGTGTGGATGACCTTACTTGCACATTGCAAAAGTCTGTATCAGAGTCTGATGGAAGA ACAGAATTCAGTGAAGCTTCCGACATTGAGGCTGAAGCTCAGAGCTACGCGAAACTTGGCATTGCTCTTCACGTGATCCACGAGTGTTTCGAGCCTCTTG AAGAATCCAGCACGGGAAGAGATGTCGTGAGTGATGTTATCTTCAGTCAAAGGTCGGAAATCAGACGCCTGGATTTTCGAGGCTTCTATACCGTGCTCTT GGAGAAAGACGATGAAGTCATTAGTGTCGCAACTATAAGAATCTTCGGAGACAAAGTGGCAGAAGTGCCTCTAGTTGCAACAAGGCACCAGTATCGTCAG CGCGGGATGTGTCGCATACTAATGTATGTGATTGAAAAGAAGCTGACAGAACTAGGTGTTGAGCGGCTGGTTCTACCTGCTGTTCCTAGCATGTTAAATA CATGGACAGGTTCATTTGGGTTCTCAAAGGTTACAGATTCTGAGAGATTGCAGTTTGTGGATCCCATTTTCTTGAACTTTCCAGGCACCATCATGTGTCA CAAACTGTTGACCACCAATGAATCAAGTCCATTGAAGAAAGAAATTCCATCACTGCCTTTTCACGGTAACTCCGGAAAAGGTGAAGAAATGGAGCTGCAG CTTGATGGGTCACCCAGCCTGGAATCTGAAGTAGTTCAAGCTGAGAAAACAGAGCAGCAACAGGGAGCACCATTAACAAAATAA
AA sequence Show only first row Show all	>Lus10015266 pacid=23178730 polypeptide=Lus10015266 locus=Lus10015266.g ID=Lus10015266.BGIv1.0 annot-version=v1.0 MAEEKGAGGWPKLKNPRFYTSILNDPVHDSKLQIPDTFVAEHGSRLSKKKKVVLKLPSGAEWLVKVAISKGGKMWFDEGWREFAEFYTIAPDHLLAFEYH GHGNFHVFIFTEIVYRTHLQEPDVHVKLEYGADSYAESLPFSPKTRDKTPLESLQPPPSKLRRTTLNTDRRLGEYLGDEGLNRDLGGASQKRKLIRFAGE KETSCLARATAAFKSENPFIMKVMQPSYLTNGSKPLFLRSSFFLENFKHKSGDIFLHVLGGKTWEVQYNVYVKKKAAVFKAKTWGAFARDNGLKIGDVCA FEVLKKGETEKPTLNVAIFRADQGIDRDVHPPDESKLKSALLLSDREGSEGRSSRGFQNAPNEVKLTIGNRSLAVTCGDEDRSGNGVLNKVEIFVLAGNL QSLTTLCINPYTGNSRKQSNLVLQSCGGLEAANAFTSDLPFFKVVMSRAHLSKSFVVGMIPAEFHKHVNEAKAELWFKGLRWGVKIANYTGGRNARKIIS TGWKSFVNANTLKNGDVCIFESLKGEADDGGSRRMTDMVRSEDEGFEGSWHEGTVSGRRKIGSSAEFEIELDHFLDVDVVTVSLVVSDDEQLSSTRGYIR PFPPEFTTINEYMLPFGLCVDVNCNDKGWWEGVVFDYEDGSNQRKVFFPDIGIEIVVPVGELRITQDWDEVSGKWNHRGMWLFLDLIEEYTGKGGRIPVS IKQLWYDLRHKKGFWNIGGGDWTCSSRPVWEELVSDVVRCNLELVSDRLFNELSLPDGARKLSELAKSVNSVTDNADSESMLQQLMLTEKSTPERDELLA EVVQMTSLSGEIVEAVSSSSVMEIESCDFDQAKNSSSHGRSDSKLPQPLLIENSVPEGDEVSTYSAMETERCDLLTPSLRKNQKFRWLPAGPDMVQEPKY CPEAIVKYAQGSGEMVAKAKQHLLYLEWSIQYYMDEYKRPRFHFISPDGKCYYSLKQVCRILVNSEDKKNPLSDSRYECPKAIVDCYKVSCAGGASKNSD VIKRAKENLKAMGWSIEEKLLGNGRRVKVYKSPRGQSYTSLRMACQSCMNETDTSVASKPIKLQRKSSRPSGDIRRGQRGKTHQTGAQPDGIVKLRTPLP KSVSRKTAEIYSRLADMKRLTQPKHLRSSKRVKLTPKKSSGGDPLTMVSWLIDNNTIFPREKVYYRTSKDGDDGDSKPKGRITREGIKCFCCMKVFSLSS FELHVGNKYYRNYHHGPSSSLFLADGRSLSDCQVQVMRQGKEMSLKSQPLKRLKGRHEGENDEVCSVCQYGGELILCDQCPSSFHGGCLGMQDVPGGDWF CPSCCCRTCKRKQVLKDSESFLDESILKCTQCEYSYHITCLKKNGVKNRYLGHKEGNWFCGKNCKRIFADLSAHLRIPIPTGVDDLTCTLQKSVSESDGR TEFSEASDIEAEAQSYAKLGIALHVIHECFEPLEESSTGRDVVSDVIFSQRSEIRRLDFRGFYTVLLEKDDEVISVATIRIFGDKVAEVPLVATRHQYRQ RGMCRILMYVIEKKLTELGVERLVLPAVPSMLNTWTGSFGFSKVTDSERLQFVDPIFLNFPGTIMCHKLLTTNESSPLKKEIPSLPFHGNSGKGEEMELQ LDGSPSLESEVVQAEKTEQQQGAPLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	0	1
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	1.7	0.8728
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	5.5	0.8189
AT4G13150			unknown protein		Lus10038175 [exp]	5.8	0.8397
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	7.2	0.8262
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	8.8	0.8181
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	13.1	0.8368
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	17.3	0.8036
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10006324 [exp]	19.4	0.7909
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	20.7	0.8022
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	21.2	0.7843

Compare expression of checked genes

Lus10015266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.