Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46280 1062 / 0 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46290 729 / 0 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 438 / 9e-141 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT4G02060 360 / 4e-109 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 343 / 4e-103 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 343 / 1e-101 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G44900 336 / 2e-98 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 326 / 1e-95 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 272 / 2e-77 MCM8 minichromosome maintenance 8 (.1) AT2G04540 248 / 5e-72 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025389 [exp] 1460 / 0 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025390 [exp] 874 / 0 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10040883 [exp] 786 / 0 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 651 / 0 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 647 / 0 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 567 / 0 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 463 / 9e-150 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 455 / 5e-148 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10001452 [exp] 350 / 2e-105 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131600 [exp] 1214 / 0 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.011G079700 [exp] 761 / 0 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 758 / 0 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 659 / 0 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 631 / 0 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.006G138000 [exp] 457 / 1e-147 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 445 / 4e-143 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.014G121000 [exp] 351 / 4e-106 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 351 / 6e-106 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 348 / 5e-104 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015267 pacid=23178749 polypeptide=Lus10015267 locus=Lus10015267.g ID=Lus10015267.BGIv1.0 annot-version=v1.0 ATGCAAGCTCTCCACTCCCTACAATCCCCACCACTCCGCTCTTCCAATCTCCTAACACCCTTCCGCCGCAATGCGACCCGACCCGCCTCACTCTCCAGGC GGAGCAACCTCGTCACCGCTGCCGCCGTTTCTTCTTCAGCAGCTCCGCAGCGGGAGACTGACCCGAAGAAGAGAGTGGTGATCACAGGGATGGGTTTGGT CTCTGTCTTTGGAAACGACGTCGATGCTTACTACGAGAAGCTCCTCGCCGGGGAGAGCGGGATCACTCTGATCGATCGCTTCGACGCTTCCAAATTCCCC ACCCGGTTCGCCGGCCAGATCCGTGGGTTTAGTGCTCAGGGATACATCGATGGAAAGAATGACAGGAGGCTCGATGATTGCTTGAGGTACAGCATTGTTG CTGGGAAGAAGGCGCTTGAGGATGCGGATCTTGGCGGGGATAAACTTTCCAAGATTGACTTGCAGAAAGCTGGAGTGCTCGTTGGGACAGGAATGGGTGG TCTTACAGTGTTTTCTGATAATGTCCAGACGTTGATTGAGAAAGGGCACAGGAAAGTTTCCCCATTTTTCATCCCTTACTCGATAACAAACATGGGCTCG GCATTGCTGGCAATTGAACTCGGGTTTATGGGACCGAATTATTCGATTTCAACTGCTTGTGCCACCTCCAACTACTGCTTCTACGCTGCTGCCAACCATA TCCGCCGTGGTGAGGCCGATTTGATGATTGCCGGTGGAAGCGAAGCTGCTGTTATTCCTATTGGGTTGGGTGGATTCGTGGCGTGCAGGGCCTTATCTCA GAGGAATGATGATCCGAAAACTGCTTCAAGGCCGTGGGACAAAGATCGAGATGGTTTTGTTATGGGCGAAGGTGCAGGAGTCTTGATTATGGAGAGTTTG GAGCATGCGATGAAACGTGGCGCACCCATCATTGCCGAGTACTTAGGAGGTGCTGTTAATTGTGATGCTTATCATATGACCGATCCAAGACGCGATGGAC TTGGCGTTTCTACTTGTATCATGAGAAGTCTCGAGGATGCTGGTGTGTCACCTGAAGAGGTGAACTACATAAATGCCCATGCAACCTCCACTCTAGCTGG TGACCTTGCGGAGATAAATGCCATAAAGAAGGTGTTCAAAAACACTTCAGAGATTAAAATCAACGCAACTAAGTCTATGATAGGCCATTGTCTTGGCGCT TCAGGAGGTTTGGAAGCAATAGCTTTAGTGAAAGCCATAAACACCGGATGGCTACATCCTTCCATCAATCAATTTAACCCGGAGCCGTCAATTGAATTCA ATACAGTTGCCAACGAGAAGCAGCAACATGAAGTGAACGTTGGAACTCTCTCCACTTCTGAGTTTCATCCTTTTTCATTGGCAAGGAGCTGCGAATTTGC AGACAGTGACCTTCAGAAAATGGCGAACTACGATGACCGGAGCAGCCACAAGCGAGCTTTCCTCGATTTCCTTGACCAAAATGTATACAAGAACGAGATC AAGACCATGATCGACCAGAGGCGTCGCCGCCTCATCGTCAACATCTCCGATCTTCACTCTTTCCAAGACTTCGGTTCCAGGATATTGAAGAATCCAAGCG AGTATATGCAACCGTTCTGTGATGCAGCCACCGATGTTGCTCGAAGTATCGATCCTCAGTTCTTGAAGGAAGGAGAGGAAGTTCATGTCGGTTTTGAGGG AGCATTCGTGTCTCGTCGTGTCTCGCCTAGAGAGCTTCTCTCTGAGTACATAGGCTCGATGGTTTGCGTTGAGGGCATTGTCACCAAATGTTCTCTAGTT AGGCCTAAGGTGGTGAAGAGCGTTCATTTCTGCCCTACAACTGGAGAACTCACATCTCGTGAGTATCGAGATATCACCTCGAATGTAGGCTTGCCTACAG GATCTGTGTATCCCACAAGGGATGAGAATGGTAACCTATTGGTAACTGAATATGGGATGTGCACGTATAAAGATCACCAGACATTGTCAGTGCAAGAAAT GCCTGAGAATTCTGCTCCGGGGCAGCTCCCACGAACATTGGATGTCATCGTTGAGGATGATCTTGTTGATTCATGTAAGCCTGGAGATAGGGTGGCCATA GGTGGGGTTTACAAAGCACTTGCTGGGAAGACCAAGGGAAGTGTGAATGGAGTATTTAGGACTGTTGTTGTGGCTAATAATGTTTCCCTCCTCAACAAAT TGGCGAATTCTCCAATTTACAGTACTGATGATATTAAGGAGATTAAAAAGATAGCTGAAAGAGCTGACGTATTTGACCTACTGGGTAACTCAATTGCACC TTCAATATTTGGGCACTCATGGATAAAGAAGGCTGTTGTTTTGCTAATGGTAGGCGGAGTGGAAAAGAATTTGGACAACGGCACCCACTTGAGAGGTGAC ATCAACATGATGATGGTTGGCGATCCATCCGTTGCGAAATCACAACTACTCCGAGCAATCATTAATATAGCTCCTTTGGCAATATCGACCACTGGCCGTG GCTCTTCTGGTGTGGGGTTGACAGCTGCTGTAACTTCTGATCAAGAAACAGGAGAAAGAAGGCTTGAAGCTGGAGCCATGGTTCTTGCTGACCGAGGTGT TGTTTGTATTGATGAATTTGACAAGATGAACGATCAGGATCGTGTCGCCATTCATGAAGTTATGGAGCAGCAGACTGTTACTATTGCCAAAGCCGGGATC CATGCATCACTCAATGCTAGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGACCGCTCGCTGACTCCTACAAAGAATATAGGCCTCC CAGACTCTTTGCTTTCCCGGTTTGATTTGCTTTTCATAGTATTGGATCAAATGGACCCTGAGATTGACCGTCACATCTCGGAGCATGTCTTGAGGATGCA TCGGTACCGTTCTGCAAGTGATTCAGGTGATGCAGCAGCTGATGCTCGTGGAACATACGACAGAGAAGAGGAGGACGAAGCAGACAAATCCATCTATGTC AAGCATAACCGAATGCTCCATGGGAAGAGAACTGACAGGAGACCAAAAAAGGATACACTTAAGATAAATTTTCTTAAGAAATATATTCACTATGCAAAGC ACAGGTTCCAGCCTAAGCTGACTGATGAGGCGTCCGAGAAAATTGCAACAGCTTATGCTGAACTGAGAAATTCTGGAACAACAACTCAGACGGGAGGAAC CCTTCCAATCACTGCCAGAACATTAGAAACCATAATTCGTCTCTCTGCCGCCCATGCGAAGTTGAAATTGAGTAGTCAGGTTACAAAGACTGATGTCGAT GCTGCTCTGAAAGTTCTCAACTTTGCCATATACCATCAAGAACTAACGGATATGGACAATCGTGAACACGAAAGGGAGATGGAAGCTGAGAGGGAAAATA GAGCCCAACTTCATCGATCGAGTAGGACCACAGGAGATGATGATCAAGCTCCTACTGATGCTGGCAGAGAAGACCCTGCGGTGGATGCCATGGACGTAGA TGACCATCCGACCGAGCAAACCTCTACAGAGTTATCGAAAGAAAGGATCGAGGCATTCAACTCGGCCTTTCTACAATGTATGCGGTACCAGCAGAGCATA ACCATAGACGATCTGGAGAGGACAGTCAATACTGGAACCACACAATACACAAGGCCAGAGATCATGCTTCTGCTACAGAAACTGCAAGATGACAATAGAG TGATGATCGCCGAGGCTGACGGGAAGGTTCATTTGGTTTGA
AA sequence Show only first row Show all	>Lus10015267 pacid=23178749 polypeptide=Lus10015267 locus=Lus10015267.g ID=Lus10015267.BGIv1.0 annot-version=v1.0 MQALHSLQSPPLRSSNLLTPFRRNATRPASLSRRSNLVTAAAVSSSAAPQRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLAGESGITLIDRFDASKFP TRFAGQIRGFSAQGYIDGKNDRRLDDCLRYSIVAGKKALEDADLGGDKLSKIDLQKAGVLVGTGMGGLTVFSDNVQTLIEKGHRKVSPFFIPYSITNMGS ALLAIELGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMIAGGSEAAVIPIGLGGFVACRALSQRNDDPKTASRPWDKDRDGFVMGEGAGVLIMESL EHAMKRGAPIIAEYLGGAVNCDAYHMTDPRRDGLGVSTCIMRSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTSEIKINATKSMIGHCLGA SGGLEAIALVKAINTGWLHPSINQFNPEPSIEFNTVANEKQQHEVNVGTLSTSEFHPFSLARSCEFADSDLQKMANYDDRSSHKRAFLDFLDQNVYKNEI KTMIDQRRRRLIVNISDLHSFQDFGSRILKNPSEYMQPFCDAATDVARSIDPQFLKEGEEVHVGFEGAFVSRRVSPRELLSEYIGSMVCVEGIVTKCSLV RPKVVKSVHFCPTTGELTSREYRDITSNVGLPTGSVYPTRDENGNLLVTEYGMCTYKDHQTLSVQEMPENSAPGQLPRTLDVIVEDDLVDSCKPGDRVAI GGVYKALAGKTKGSVNGVFRTVVVANNVSLLNKLANSPIYSTDDIKEIKKIAERADVFDLLGNSIAPSIFGHSWIKKAVVLLMVGGVEKNLDNGTHLRGD INMMMVGDPSVAKSQLLRAIINIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGI HASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRHISEHVLRMHRYRSASDSGDAAADARGTYDREEEDEADKSIYV KHNRMLHGKRTDRRPKKDTLKINFLKKYIHYAKHRFQPKLTDEASEKIATAYAELRNSGTTTQTGGTLPITARTLETIIRLSAAHAKLKLSSQVTKTDVD AALKVLNFAIYHQELTDMDNREHEREMEAERENRAQLHRSSRTTGDDDQAPTDAGREDPAVDAMDVDDHPTEQTSTELSKERIEAFNSAFLQCMRYQQSI TIDDLERTVNTGTTQYTRPEIMLLLQKLQDDNRVMIAEADGKVHLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10015267 [exp]	0	1
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	5.0	0.9495
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	7.2	0.9409
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	8.5	0.9378
AT5G13520			peptidase M1 family protein (....		Lus10023479 [exp]	8.7	0.9166
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	10.8	0.9388
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	11.2	0.9392
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	11.6	0.9206
AT5G54970			unknown protein		Lus10043108 [exp]	13.0	0.9175
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	13.4	0.9381
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	13.6	0.9336

Compare expression of checked genes

Lus10015267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.