Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 488 / 2e-159 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 466 / 2e-150 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 426 / 1e-135 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G41610 388 / 2e-121 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 369 / 4e-114 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 356 / 4e-109 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 326 / 4e-98 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 326 / 1e-97 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G06970 304 / 7e-90 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 273 / 1e-78 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040881 [exp] 1010 / 0 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 1001 / 0 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 493 / 1e-160 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 485 / 2e-157 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 421 / 5e-133 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10039138 [exp] 385 / 3e-119 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 373 / 2e-115 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017541 [exp] 328 / 5e-97 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 315 / 8e-94 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131300 [exp] 669 / 0 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 506 / 3e-166 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 432 / 1e-137 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 421 / 2e-133 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G005200 [exp] 394 / 2e-123 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.013G142301 [exp] 390 / 2e-122 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 390 / 6e-122 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.001G096320 [exp] 389 / 6e-122 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 386 / 1e-120 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G102700 [exp] 375 / 1e-116 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10015268 pacid=23178707 polypeptide=Lus10015268 locus=Lus10015268.g ID=Lus10015268.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAGGAAGCTTCAAATTCGACGAGATCGTCGCCTTCTGTATCTACTCCTGCCTCCTCAGCTCCCGGAGAAAGGAGAATGGTTTTGAGGATTA AATCCGGACAGGGGGCGATGAACTCCGTGACGCAAGTTAGTTTCAGCAGCGAGGAAGATCGGAGACTTGCTGTGAAGAAGCCGTCGACAACGAAGAAGAA GAAGAAGACGAAGAAGAAACATGTGAAGTTTGATAGTAAAGCTCCGAAGAAGCCGCCGACTGCCTTCTTCTTTTTCTTGGAGGATTTCCGCAAAGGCTAT CAGGAGCAGAATCCAGATGTCAAGAACATGGCTGATGTTGGAAAAGCTTGTGGGGAAAAATGGAAAACCATGGGGCATGAGGAAAAAGTCAAGTACTACG ACCTTGCCACCCAGAAAAGGGCAGAGTTCGAAAGTGCCATGAAAGAATACATAAAGAAGAAGGGAGGGATCGTCGTAGGGCCGACGGTTTTAGGCAGAAT CCGGTTCTTTAAGTATATGTTTCCGTTGAGATCGATCAATCTGGTCGAAACTGTGGCGTATTGGGCCTTGACATGCCACGTCTTCCTTCTCGGTTTAGAA ACCGACGTCGCCTCCGTCCTCCGCGCCGGTAAGAAAGCCGTCCACGTCGCTGCTGGAGGCGTCCTCTTCCCTCTCGCCGTCGGGACCGGACTTTACTACC TGGTCGAAGGAATCACTGTAGCTGACGACGGAGCCAACAGTCGCGGCAGTGGTCATTTCGTATACTTCGCTGCGCCGCTTGGGATGACAGGATTCCCCGT GGTTTCCAAAATACTCGCCGAGCTGAAGCTGATCCACACCGATCTCGGTAGGCTGGCGATGTCCTGTGCTCTTGTGGAGGATCTAGTTGGATGGATCTTC GTGTTGATTCTGTTTCCTTACACAGTGAGCGCGCTGAATGTTGTTTACTCCGTTCCGGCTACCGTCGCTTTCATTCTGTTCTGTGTCTACGCAGTCCGTC CTGTTATGGCGTACCTAATCAGTCAAACTTCTTGCTACCTCAGCAACACGAATAACGAGTACTACCTGAGCTTCGTGCTGATCTCAGTTTCCATGTTTGC TTGTTGTACTGAGGTTCTGGGAACTGGATCTTTGATCGGAGCTTTCGTTTTCGGGGTTATAATGCCGGACAGACTGCTTGCCGGGATGATGCTGGATAAG TTCGACGATATGATTTCCGGCTACTTGCTTCCGATGTACTTTGTCTGCTGTGGGCTAAGGACTCGGTTAATGGAAGTCGTAGATTACTGGGGGATAACTT TGTTCATCCTGTCGCTTTCTTGCTTGCTTAAGGTCTTTGGAGCTCTCATCACCACTTCCAGGTATAACATCTCCAGACAAGATGCTTTCGCTCTTGGGAT GCTTTCCAACTCCAAAGGCATCTTGGCTGCGTTCATAGCCAACTTGGCGCTTGATAAAAATATATTAGTTAGCCATGAATATTCAATGCTGGTGCTCTGC ATTCTGATCATGACAGGAATCAGCGGCCCAGTAGTTGCGTTTATGTACCAACCATCGAAGCGGCTCTCACATTACAAGCGAAGGACGATACAACAAGTGA AAGCCGACTCCGAACTTCGAATCCTAGCTTGCTTCCATGGCCCTTACAACATAACAGGGATGATCAACCTCTTCGATTCCTCCGCAACGACCGAAGAATC CAAATCCGCTCTGGACGTCTTCGCCCTTCACCTGGTCGAGCTCACAGGCCGATCCTCAGCAATGCTGATCATTCACAACCAGGGCAAAGGCGGCTGTAGT AGACATAGAGATTCCGATTCCGAACAGATCGTTACAGCTCTCGAGATGTTCTCCAGTCTTAATGAATCCGTCAACGTCCAGATTCTCACGGCATTGTCGC CCTTCGTGACAATGCCTGACGATATCTGCAGCCTGGCTGAGGACAAAAGGGTAACATTCATGATCTTACCCTTCCACAAACCGCCAGCTCAAGATGGAGA ACTCGACGAAAAGGGAAACACCTCGTTTCGAGGTGTTACCCTTAACGTGCTGGCGAATGCACCTTGCACCGTCGGGATATTCATAGACCGAGGGTATGGC GATCGGCAGAATGACGAGAATGCCATTGCAAAGCGGGAGGTTGCCATGTTGTTTTTCGGTGGACCCGACGATCGAGAAGCTCTAGCTTACTCTTTGAGGA TGGCATCAAGCGGAATCGTCAATCTCCACGTGGTTCGTTTCGAGTCGGCCATCATCGATCACTCGACTCAGATCAATGAAGGAACATACATAGAGAGACA AAAAAAGCTAGACCAGAGGCATCTAGACGAGTTCCGGATGAAATCCGCCACTCAGCCGTGGGTCAGCTACGAGGAGAGGATCGCGAGCGGGGAGGAAGAG GTCATCTCCACGCTGAACGAAATGACGAGAACCCTCTCGATCGACTTGTACCTAGTCGGGAAAGGAGAAGCGGTGCTCCAGCCTATGACAGCAGCGTTGC TGGACTGGTGCGAGTACCACGAGCTGGGGGCTATCGGGGATGCGTTGACTACGATGAGCGGTACGAGAAGCTCGGTTCTCGTGATTCAACAGTACAACGG GCCGGTGGAGGACGGAGACGAAGGGAGTAGTACTGAGCATAGGGTGGTTGATGTCGGAGATGGGAACGAGGGATCGCCGCATTCGAGTACGAGTATTAGG ATGAAGTGGGAGCCTATCGGGAAATGGCAGTTGCTTGGAGAGGAAGATTTCGAACATAGGCAGCGTAAACGTGACGATGGGTTCGATTAA
AA sequence Show only first row Show all	>Lus10015268 pacid=23178707 polypeptide=Lus10015268 locus=Lus10015268.g ID=Lus10015268.BGIv1.0 annot-version=v1.0 MAAKEASNSTRSSPSVSTPASSAPGERRMVLRIKSGQGAMNSVTQVSFSSEEDRRLAVKKPSTTKKKKKTKKKHVKFDSKAPKKPPTAFFFFLEDFRKGY QEQNPDVKNMADVGKACGEKWKTMGHEEKVKYYDLATQKRAEFESAMKEYIKKKGGIVVGPTVLGRIRFFKYMFPLRSINLVETVAYWALTCHVFLLGLE TDVASVLRAGKKAVHVAAGGVLFPLAVGTGLYYLVEGITVADDGANSRGSGHFVYFAAPLGMTGFPVVSKILAELKLIHTDLGRLAMSCALVEDLVGWIF VLILFPYTVSALNVVYSVPATVAFILFCVYAVRPVMAYLISQTSCYLSNTNNEYYLSFVLISVSMFACCTEVLGTGSLIGAFVFGVIMPDRLLAGMMLDK FDDMISGYLLPMYFVCCGLRTRLMEVVDYWGITLFILSLSCLLKVFGALITTSRYNISRQDAFALGMLSNSKGILAAFIANLALDKNILVSHEYSMLVLC ILIMTGISGPVVAFMYQPSKRLSHYKRRTIQQVKADSELRILACFHGPYNITGMINLFDSSATTEESKSALDVFALHLVELTGRSSAMLIIHNQGKGGCS RHRDSDSEQIVTALEMFSSLNESVNVQILTALSPFVTMPDDICSLAEDKRVTFMILPFHKPPAQDGELDEKGNTSFRGVTLNVLANAPCTVGIFIDRGYG DRQNDENAIAKREVAMLFFGGPDDREALAYSLRMASSGIVNLHVVRFESAIIDHSTQINEGTYIERQKKLDQRHLDEFRMKSATQPWVSYEERIASGEEE VISTLNEMTRTLSIDLYLVGKGEAVLQPMTAALLDWCEYHELGAIGDALTTMSGTRSSVLVIQQYNGPVEDGDEGSSTEHRVVDVGDGNEGSPHSSTSIR MKWEPIGKWQLLGEEDFEHRQRKRDDGFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10015268 [exp]	0	1
AT1G04985			unknown protein		Lus10015157 [exp]	5.1	0.8668
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	6.5	0.8460
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	6.9	0.8651
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	30.3	0.8548
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	36.2	0.7829
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	36.6	0.7742
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	46.8	0.8379
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	53.1	0.8047
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	56.1	0.7926
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	62.1	0.7894

Compare expression of checked genes

Lus10015268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.