Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23465 110 / 7e-31 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 110 / 1e-30 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G29960 104 / 2e-28 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025393 [exp] 204 / 2e-67 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10005571 [exp] 114 / 4e-32 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10013703 [exp] 115 / 1e-29 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10033448 [exp] 59 / 2e-11 AT1G53530 110 / 1e-32 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10036985 [exp] 59 / 4e-10 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10015755 [exp] 49 / 4e-07 AT1G53530 86 / 4e-22 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10002492 [exp] 45 / 5e-06 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10004822 [exp] 44 / 2e-05 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092900 [exp] 134 / 6e-40 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 129 / 3e-38 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.001G380400 [exp] 117 / 1e-33 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10015272 pacid=23178791 polypeptide=Lus10015272 locus=Lus10015272.g ID=Lus10015272.BGIv1.0 annot-version=v1.0 ATGGGCATTATTCACGGGCAATGGATAGGGGATAGGGGTATCCGTCCCGTATCCGACCCATTGCCAAGTCACTTTAAAACGCCGCCGTTTCTTCCCGCCA TTATGATCACAATAGCCCGTACTGAACTCTATCTTTCTCCCAAGCTAACAAATGGCCGACGAGATTCTTCGCCTCTCCGCCGATCTAATCGACGCCGACA AATCATCCTTCCGCCGGCGATGATGCGGAGCTTCATCAGAGAGGTCTGTGACAAAACCCTAATGGTGGCAAAGGCATACGCCATCCTCCACGTCACGAAT TCCCACCTCTGTACACTTGCACTTGCTTACGGTCCGAGCATGGTTCCAACTATCAACCTCACTGGCGACCTAATCCTGGCCGAGAGGGTCTCCCCGCGGC TTGGAAAGGTGAAGGTTGGCGACATTGTTATAGTCCGATCGCCACTAGACCCGAGAAGGATCGTGACCAAACGAGTCCTTGGCATGGAGGGGGAACAAGT TACTTACTTGCTCGATCCTTATAAGAGCGACGAAGTCCACACTGCTGTGGTGTGGCCTCCTAAAGATTTTGGCAAAATCGGAGAAAGAAAGTGA
AA sequence Show only first row Show all	>Lus10015272 pacid=23178791 polypeptide=Lus10015272 locus=Lus10015272.g ID=Lus10015272.BGIv1.0 annot-version=v1.0 MGIIHGQWIGDRGIRPVSDPLPSHFKTPPFLPAIMITIARTELYLSPKLTNGRRDSSPLRRSNRRRQIILPPAMMRSFIREVCDKTLMVAKAYAILHVTN SHLCTLALAYGPSMVPTINLTGDLILAERVSPRLGKVKVGDIVIVRSPLDPRRIVTKRVLGMEGEQVTYLLDPYKSDEVHTAVVWPPKDFGKIGERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	0	1
AT5G46560			unknown protein		Lus10011046 [exp]	3.5	0.8487
					Lus10024539 [exp]	3.9	0.8189
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	4.0	0.8033
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	5.3	0.8284
AT1G48170			unknown protein		Lus10022783 [exp]	6.6	0.7658
AT1G55170			unknown protein		Lus10034321 [exp]	8.4	0.8019
AT1G48170			unknown protein		Lus10022781 [exp]	12.4	0.7485
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	15.9	0.7378
					Lus10008493 [exp]	18.7	0.7102
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	21.8	0.7882

Compare expression of checked genes

Lus10015272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.