Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34200 105 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 101 / 1e-25 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 96 / 2e-23 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G37950 94 / 9e-23 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 91 / 2e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 56 / 1e-08 RING/U-box superfamily protein (.1.2.3.4) AT5G08750 56 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT5G63780 55 / 2e-08 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G09760 54 / 5e-08 RING/U-box superfamily protein (.1) AT5G03180 54 / 7e-08 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025394 [exp] 256 / 6e-85 AT2G34200 97 / 4e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 201 / 8e-64 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 200 / 3e-63 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 110 / 1e-28 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 108 / 3e-28 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 101 / 2e-25 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 100 / 6e-25 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 100 / 9e-25 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 95 / 2e-23 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059200 [exp] 184 / 2e-55 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 171 / 2e-50 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 117 / 1e-31 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 117 / 2e-31 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 108 / 5e-28 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 107 / 2e-27 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 91 / 8e-22 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 87 / 3e-20 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G129000 [exp] 57 / 5e-09 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.009G013300 [exp] 56 / 1e-08 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10015273 pacid=23178764 polypeptide=Lus10015273 locus=Lus10015273.g ID=Lus10015273.BGIv1.0 annot-version=v1.0 ATGGTGGAAGCTGGGGATTCAAGTCGAGGAACGGTTCAAGTTTCCGGCAATGGAATTGGCTTGGAGATGATTGCTAATAAGGAATCGTCAGATTCAAAAA CAGACGCGCCGGCGGCAAGTTTCAGTGGCGGGAACAGAGATTTGGATGAAGGAGTGGACGAATTGCGGCGGGATGTGGGCTCGGAAAATGGTCGAACAGG TGGTGGGCATGAGAAAGTCAATGAGATTGCTAAGGAATTGTCAGATTCAAGAACAGAATTGGTTGCTAAGGACGAGCTGGTGAAGAATTCTTGCCAGGTG GCGGGGAGTTTCAGTGATTTGGATGCAGGAGTCAGCTCGGAAAATGGTCGAACAGGTGGTGGGCATGGAAAAGTGGATGCATTTGATGAAGGAGGGGAAG GAAATGGCATGAACTCGGACAAATCTAAGGCGGCAAAAGTTTCGAAATTTGATAAGGCGTCGTCGTATGTGATTGAGATGAACTTTGATGGTGGGGAGAA GGTTTGCAGGATCTGCCATTTGAGTTCTGAAGGGTCGATAGAGGTAGTGGCGGCTGCTCCTGGTGTGGTAGTGACATCAATGGAGCTGATTCAGCTTGGT TGTGGATGTAAAGATGAGCTTGGTGTTGCTCATTCTCATTGCGGGGAAGCTTGGTTTAAGCTCAAAGGCAACAGAGTGTGTGAAATCTGCGGGGAGACAG CAAAGAACATCACAGGCGTGGCGGACAACATGGGATTCATGGAGGAGTGGAACCAGATGAGACTAATCCACGGCACGAACCAATCGGAAACCGGCGGAGG AGGAGGATGCTGGAGGGGACAACCATTCTGCAACTTCCTGATGGCATGCCTGGTAATCGCATTCGTGCTGCCATGGTTCTTCCGTGTAAATATGTTCTAA
AA sequence Show only first row Show all	>Lus10015273 pacid=23178764 polypeptide=Lus10015273 locus=Lus10015273.g ID=Lus10015273.BGIv1.0 annot-version=v1.0 MVEAGDSSRGTVQVSGNGIGLEMIANKESSDSKTDAPAASFSGGNRDLDEGVDELRRDVGSENGRTGGGHEKVNEIAKELSDSRTELVAKDELVKNSCQV AGSFSDLDAGVSSENGRTGGGHGKVDAFDEGGEGNGMNSDKSKAAKVSKFDKASSYVIEMNFDGGEKVCRICHLSSEGSIEVVAAAPGVVVTSMELIQLG CGCKDELGVAHSHCGEAWFKLKGNRVCEICGETAKNITGVADNMGFMEEWNQMRLIHGTNQSETGGGGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	0	1
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	2.2	0.7915
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10030163 [exp]	3.9	0.7987
AT2G46080			unknown protein		Lus10007920 [exp]	7.1	0.7967
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	7.5	0.7930
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	12.2	0.7983
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	18.0	0.7073
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	18.2	0.7326
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	18.3	0.6952
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10008648 [exp]	19.6	0.7295
AT1G25400			unknown protein		Lus10034335 [exp]	20.3	0.7551

Compare expression of checked genes

Lus10015273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.