Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18710 687 / 0 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT1G06390 671 / 0 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT2G30980 670 / 0 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT5G14640 617 / 0 ATSK13 shaggy-like kinase 13 (.1) AT3G05840 605 / 0 ATSK12 Protein kinase superfamily protein (.1.2) AT5G26751 602 / 0 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT4G00720 583 / 0 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT1G09840 562 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT1G57870 561 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT3G61160 527 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025395 [exp] 756 / 0 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10029240 [exp] 738 / 0 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10007291 [exp] 736 / 0 AT4G18710 709 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10001519 [exp] 606 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 606 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10013088 [exp] 600 / 0 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 594 / 0 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 573 / 0 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 570 / 0 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059000 [exp] 713 / 0 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.011G068600 [exp] 710 / 0 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.005G005400 [exp] 608 / 0 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 605 / 0 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 603 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G115600 [exp] 602 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G075100 [exp] 578 / 0 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G155000 [exp] 573 / 0 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.003G005900 [exp] 570 / 0 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.004G225700 [exp] 570 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015274 pacid=23178768 polypeptide=Lus10015274 locus=Lus10015274.g ID=Lus10015274.BGIv1.0 annot-version=v1.0 ATGTTTGTTTGCTGCAGGTTTTCTTACCCAAACACCAACGCCTGTGAGGCTGAAGTGGCTGCTCATGGAAATGATCCAGTGACAGGGCACATTATCTCCA CTACAATTGGGGGCAAAAATGGAGAGCCAAAGCAGACAATCAGTTATATGGCAGAGCGTGTGGTTGGGACTGGATCATTTGGTATAGTTTTCCAGGCTAA ATGCTTGGAAACTGGCGAGACAGTGGCAATCAAGAAAGTTTTGCAGGATAGAAGATACAAGAACCGTGAACTGCAGTTGATGAGAGTGATGGATCATGCA AATGTGATTTCGTTGAAGCATTGCTTCTTCTCTACGACGAGCAACAATGAGCTGTTTCTCAACTTGGTTATGGAGTATGTTCCAGAGAGCATGTATCGGG TTTTGAAACATTACAGCAATGCAAAGCAGGCGATGCCATTGATTTATGTGAAGTTATATGCATACCAGATTTTCCGGGGATTGGCGTATATCCACAATGT TGCTGGAGTTTGCCACAGGGATTTGAAGCCTCAAAACATCTTGGTTGATCCCCTCACTCACCAGGTCAAGCTCTGTGATTTTGGAAGTGCTAAAGTATTG GTCAAGGGTGAAGCTAACATATCCTACATCTGCTCGAGATACTATCGTGCCCCAGAGCTTATATTTGGAGCCACAGAATATACAACCTCAATTGATATCT GGTCAGCCGGCTGTGTTCTTGCTGAGCTTCTTCTGGGTCAGCCATTGTTTCCTGGAGAAAATGCAGTTGACCAGCTTGTTGAGATTATTAAGGTTCTCGG CACTCCAACACGAGAAGAAATTCGTTGTATGAACCCCAATTATACTGACTTCAGGTTTCCACAGATCAAAGCACACCCGTGGCACAAGGTTTTCCACAAG AGGATGCCTCCGGAGGCAATCGATCTGACCTCACGGTTATTGCAATACTCACCAAGTCTCCGCTGTACAGCTCTGGAAGCATGTGCCCATCCATTCTTTG ACGAGCTTAGAGACCCGAACGTCCGCTTACCAAATGGTCGGCCCGTACCAACAATCTTCAATTTCAAACAGGAGGTACGAGTCGGATCCCCCTTTAACTT TGCTTCTTCCGCGTTCAAGAATGCTTGCTGTAGTCTTAAGGAGTTTACTTTGCTTAAACAGCTAAATGGCGCTTCAGCTGAACTAGTGAACAAGTTGATA CCAGACCATATTAAACGGCAAATGGGTATGAACTTCTTGCCCGGGACCTAA
AA sequence Show only first row Show all	>Lus10015274 pacid=23178768 polypeptide=Lus10015274 locus=Lus10015274.g ID=Lus10015274.BGIv1.0 annot-version=v1.0 MFVCCRFSYPNTNACEAEVAAHGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHA NVISLKHCFFSTTSNNELFLNLVMEYVPESMYRVLKHYSNAKQAMPLIYVKLYAYQIFRGLAYIHNVAGVCHRDLKPQNILVDPLTHQVKLCDFGSAKVL VKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHK RMPPEAIDLTSRLLQYSPSLRCTALEACAHPFFDELRDPNVRLPNGRPVPTIFNFKQEVRVGSPFNFASSAFKNACCSLKEFTLLKQLNGASAELVNKLI PDHIKRQMGMNFLPGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	1.0	0.9516
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	2.4	0.8899
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10022500 [exp]	3.2	0.8405
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	4.5	0.8669
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10009134 [exp]	4.9	0.8568
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	5.0	0.8623
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	6.6	0.8400
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	8.0	0.8458
AT5G52882			P-loop containing nucleoside t...		Lus10039309 [exp]	9.0	0.8127
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	10.8	0.8708

Compare expression of checked genes

Lus10015274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.